Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 0.0e+00 1174.8 635 100.0
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 5.9e-219 764.6 640 71.9
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.4e-188 663.7 643 60.7
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.1e-177 627.5 627 62.8
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.4e-175 620.5 639 62.4
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.4e-175 619.8 639 62.4
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 3.7e-120 436.4 746 44.1
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.4e-119 434.5 742 44.7
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.6e-110 404.4 740 43.5
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 4.3e-108 396.4 678 42.9
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 3.0e-106 390.2 728 44.0
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 3.7e-104 383.3 707 44.7
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.1e-103 379.8 726 41.0
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.1e-103 379.8 726 41.0
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 4.6e-102 376.3 690 41.3
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.1e-99 367.5 751 39.4
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.4e-96 355.9 744 39.5
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.1e-94 350.9 691 42.5
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.6e-94 349.7 698 42.4
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 2.3e-93 347.4 676 41.3
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 3.0e-93 347.1 715 41.3
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 3.0e-93 347.1 728 41.3
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 2.5e-92 344.0 724 41.0
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 3.6e-91 340.1 623 45.1
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.2e-88 330.9 701 37.9
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.9e-87 327.8 684 42.4
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 3.5e-86 323.6 684 41.1
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 5.8e-81 306.2 692 40.2
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 1.7e-77 294.7 644 41.6
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 4.3e-76 290.0 633 38.5
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 2.6e-73 280.8 703 39.3
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.4e-73 280.4 737 37.9
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 9.9e-73 278.9 647 38.8
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 9.9e-73 278.9 663 39.2
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 3.8e-72 276.9 640 37.8
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 4.9e-72 276.6 703 35.7
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 8.4e-72 275.8 675 34.8
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.4e-71 274.2 650 36.9
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 6.0e-70 269.6 658 38.6
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.3e-69 267.7 747 33.6
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 3.9e-69 266.9 651 35.8
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 1.5e-68 265.0 654 38.7
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.6e-67 261.5 660 39.8
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 4.8e-67 260.0 699 37.9
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.5e-65 255.0 769 33.7
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 6.4e-64 249.6 647 35.7
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 7.1e-63 246.1 686 39.4
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 7.1e-63 246.1 647 35.1
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.7e-62 244.2 570 38.6
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.0e-61 242.3 645 38.0
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 1.8e-61 241.5 645 38.9
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.0e-61 240.7 740 33.1
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.9e-60 238.0 639 38.8
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 2.5e-60 237.7 652 38.2
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 2.5e-60 237.7 633 34.8
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 7.4e-60 236.1 639 37.6
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.3e-59 235.3 623 33.5
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.6e-59 235.0 709 37.4
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.4e-58 231.9 636 38.7
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.8e-58 231.5 661 36.6
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 5.3e-58 229.9 647 34.0
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 6.9e-58 229.6 662 36.4
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 9.0e-58 229.2 642 38.5
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.3e-56 225.3 781 32.9
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 4.2e-55 220.3 654 33.2
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 5.5e-55 219.9 662 36.3
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 3.5e-54 217.2 699 35.2
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.6e-54 216.9 667 35.8
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 3.0e-53 214.2 616 36.5
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.6e-51 208.4 666 35.6
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.5e-49 201.8 627 35.9
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 2.0e-49 201.4 634 32.5
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 4.5e-49 200.3 639 31.8
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 5.8e-49 199.9 626 32.9
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.0e-48 199.1 646 36.1
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.7e-48 198.4 275 47.3
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 4.9e-48 196.8 647 32.1
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 1.4e-47 195.3 621 33.7
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.1e-46 191.4 607 34.3
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 4.6e-46 190.3 499 33.9
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 7.9e-46 189.5 609 32.0
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 6.7e-45 186.4 632 35.0
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.1e-44 185.7 650 31.5
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 5.7e-44 183.3 554 35.0
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 9.7e-44 182.6 605 31.1
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 1.3e-43 182.2 605 30.9
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 1.3e-43 182.2 647 31.7
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 6.3e-43 179.9 656 30.8
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 8.2e-43 179.5 182 59.9
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 2.4e-42 177.9 621 31.6
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.5e-41 175.3 639 28.8
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.7e-40 171.8 170 60.6
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 2.2e-40 171.4 644 33.4
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 2.9e-40 171.0 641 34.2
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 3.8e-40 170.6 640 29.7
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 5.0e-40 170.2 643 33.6
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 6.5e-40 169.9 621 33.3
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 8.5e-40 169.5 291 40.2
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.5e-39 167.9 646 33.6
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 7.2e-39 166.4 599 31.6
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.6e-38 165.2 676 32.7
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 2.7e-38 164.5 658 30.1
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 1.4e-37 162.2 656 31.6
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 1.5e-36 158.7 201 50.7
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.3e-35 155.6 168 53.6
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.3e-35 155.6 172 62.2
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 2.2e-35 154.8 543 34.8
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 3.7e-35 154.1 165 67.9
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 4.8e-35 153.7 675 29.9
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.1e-34 152.5 617 28.7
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 1.4e-34 152.1 666 31.8
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 9.1e-34 149.4 137 61.3
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 8.5e-32 142.9 520 32.3
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 8.5e-32 142.9 159 50.9
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-31 142.5 220 46.4
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.6e-30 138.7 94 73.4
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 2.1e-30 138.3 641 30.9
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 2.7e-30 137.9 266 40.2
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.4e-29 135.6 583 31.4
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.5e-28 132.1 190 58.9
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.3e-27 129.0 180 53.3
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.2e-27 128.3 166 57.2
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 4.8e-27 127.1 164 47.6
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 6.3e-27 126.7 649 31.6
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.4e-26 124.8 153 49.7
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 3.1e-26 124.4 186 44.6
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.4e-23 115.5 132 64.4
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.9e-23 115.2 89 66.3
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 2.5e-23 114.8 542 32.1
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 7.2e-23 113.2 161 52.8
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 9.4e-23 112.8 555 31.4
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.2e-22 112.5 519 29.3
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 1.6e-22 112.1 144 47.9
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 1.6e-22 112.1 625 29.0
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 4.7e-22 110.5 156 52.6
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.9e-21 107.5 87 63.2
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 5.2e-21 107.1 89 61.8
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 1.5e-20 105.5 73 72.6
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 2.6e-20 104.8 87 60.9
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 4.4e-20 104.0 87 63.2
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.1e-18 99.4 200 38.5
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 1.6e-14 85.5 85 54.1
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 7.5e-12 76.6 523 26.0
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 9.1e-10 69.7 559 24.2
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 7.2e-07 60.1 67 52.2


User provided reference genes

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