Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 7.3e-170 600.5 311 100.0
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.4e-133 479.9 311 82.3
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.5e-130 469.9 295 84.4
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.8e-129 465.7 295 84.1
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 1.5e-127 459.9 310 81.3
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.3e-115 420.2 292 76.0
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 3.9e-115 418.7 275 78.5
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 4.3e-114 415.2 294 72.8
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 7.4e-114 414.5 290 74.5
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 3.7e-113 412.1 292 74.0
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 4.8e-113 411.8 276 78.3
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 6.3e-113 411.4 287 73.9
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 1.8e-112 409.8 287 73.2
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.8e-112 409.8 287 75.6
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 5.3e-112 408.3 276 77.5
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 6.9e-112 407.9 290 74.1
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 9.0e-112 407.5 285 74.7
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.2e-111 407.1 282 74.5
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.0e-110 404.1 275 77.1
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.3e-110 403.7 292 72.9
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.3e-110 403.7 285 74.0
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.3e-110 403.7 254 80.3
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.3e-110 403.7 276 76.1
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.2e-110 402.9 299 72.2
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.1e-109 400.6 291 74.9
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 1.4e-109 400.2 282 73.4
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.4e-109 400.2 246 81.3
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 7.2e-109 397.9 256 79.3
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.2e-108 397.1 299 71.6
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.2e-108 397.1 247 80.6
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.2e-108 397.1 246 82.1
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 2.1e-108 396.4 276 75.0
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.7e-108 396.0 282 74.8
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 4.6e-108 395.2 276 76.4
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 6.1e-108 394.8 284 74.3
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.4e-107 393.7 274 75.2
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.8e-107 393.3 299 71.6
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.3e-107 392.9 300 69.7
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 2.3e-107 392.9 275 74.5
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 3.0e-107 392.5 265 77.7
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 6.7e-107 391.3 264 76.1
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 6.7e-107 391.3 261 76.6
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 6.7e-107 391.3 300 70.7
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 8.8e-107 391.0 292 71.2
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 2.5e-106 389.4 301 69.4
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 4.3e-106 388.7 296 70.6
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 7.4e-106 387.9 276 73.2
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 1.3e-105 387.1 292 72.9
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.8e-105 386.0 251 79.7
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.7e-105 385.6 253 76.7
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 4.8e-105 385.2 255 76.5
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 1.1e-104 384.0 300 68.3
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.4e-104 383.6 240 80.8
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 3.1e-104 382.5 269 74.7
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 5.3e-104 381.7 308 68.2
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 6.9e-104 381.3 274 73.7
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 6.9e-104 381.3 296 70.9
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 6.9e-104 381.3 295 69.8
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.0e-103 379.8 277 72.6
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 5.9e-103 378.3 301 67.4
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 7.7e-103 377.9 257 74.7
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.7e-102 376.7 279 71.7
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 2.9e-102 375.9 316 67.1
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 5.0e-102 375.2 251 74.9
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 6.5e-102 374.8 291 69.8
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 8.5e-102 374.4 295 68.5
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 8.5e-102 374.4 291 69.4
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.1e-101 374.0 287 70.0
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.4e-101 373.6 289 69.2
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.9e-101 373.2 296 69.6
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.6e-100 370.2 269 71.4
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 7.9e-100 367.9 223 81.6
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 7.9e-100 367.9 272 71.0
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 2.3e-99 366.3 311 64.6
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.0e-99 365.9 289 69.6
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 2.0e-98 363.2 255 73.7
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 2.0e-98 363.2 247 75.3
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 3.7e-97 359.0 243 74.9
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 5.3e-96 355.1 278 68.3
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 7.0e-96 354.8 274 69.3
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.2e-95 354.0 226 79.2
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 2.6e-95 352.8 276 69.6
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.0e-94 350.9 198 90.9
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 7.2e-93 344.7 287 64.8
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 7.2e-93 344.7 241 73.4
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 9.4e-93 344.4 292 63.0
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.1e-92 343.2 256 69.9
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 3.6e-92 342.4 249 74.7
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 6.3e-89 331.6 254 68.1
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.8e-88 330.1 244 68.9
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-86 323.6 292 62.3
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 6.5e-86 321.6 223 74.4
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 6.5e-86 321.6 240 70.4
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 7.2e-85 318.2 213 74.2
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.4e-83 313.9 288 62.8
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 2.3e-83 313.2 280 62.5
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 2.6e-82 309.7 197 77.2
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.7e-81 307.0 364 51.6
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 7.0e-80 301.6 196 76.5
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 2.0e-79 300.1 348 53.4
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 3.5e-79 299.3 208 75.0
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 4.2e-77 292.4 195 76.4
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.8e-75 287.0 170 84.1
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 7.0e-72 275.0 233 62.7
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.0e-70 271.2 174 78.7
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 3.2e-64 249.6 247 54.3
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 3.6e-60 236.1 351 44.2
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 1.4e-59 234.2 223 58.3
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 6.8e-59 231.9 237 51.1
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 3.4e-58 229.6 232 50.9
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.7e-57 227.3 231 48.9
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.5e-53 214.2 199 59.3
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.4e-48 197.6 268 47.0
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.2e-47 194.5 167 58.1
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.9e-41 173.3 142 70.4
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 4.0e-35 152.9 193 51.3
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 1.7e-33 147.5 119 66.4
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.9e-33 146.0 91 78.0
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 4.2e-32 142.9 148 57.4
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 7.3e-29 132.1 193 46.1
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 2.8e-28 130.2 142 55.6
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 9.3e-24 115.2 316 32.3
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.2e-23 114.8 73 80.8
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-22 110.5 87 60.9
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.9e-22 109.8 170 40.0
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.1e-20 104.0 78 65.4
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.4e-19 101.3 74 70.3
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 3.1e-19 100.1 59 83.1
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 1.2e-15 88.2 199 32.2
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-15 87.8 199 32.7
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 3.5e-15 86.7 102 50.0
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 6.0e-15 85.9 232 29.7
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 1.0e-14 85.1 90 57.8
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.3e-14 84.0 50 80.0
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 3.0e-14 83.6 55 72.7
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 3.0e-14 83.6 55 72.7
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 3.0e-14 83.6 57 70.2
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 1.5e-13 81.3 93 51.6
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 4.3e-13 79.7 51 72.5
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 1.3e-12 78.2 89 51.7
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.6e-12 77.8 59 61.0
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 1.4e-11 74.7 94 51.1
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-09 68.6 56 64.3
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 2.2e-09 67.4 242 23.6
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 4.9e-09 66.2 174 27.0
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 7.1e-08 62.4 58 58.6
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 1.3e-06 58.2 205 22.0
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 3.0e-06 57.0 221 21.3
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 5.1e-06 56.2 237 22.8
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 8.7e-06 55.5 216 21.8


User provided reference genes

Program Settings