Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.0e-187 659.8 318 100.0
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 9.4e-173 610.1 318 90.9
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 9.4e-165 583.6 321 86.6
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 8.0e-164 580.5 321 86.3
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 3.3e-162 575.1 321 85.7
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 4.8e-153 544.7 318 80.2
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 2.4e-152 542.3 318 81.8
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 7.0e-152 540.8 317 79.5
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 1.6e-151 539.7 316 79.4
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.0e-150 537.0 318 81.1
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 2.3e-150 535.8 317 79.2
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.3e-150 535.8 316 79.4
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 8.6e-150 533.9 316 79.1
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 1.5e-149 533.1 317 77.9
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 3.3e-149 531.9 316 79.7
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 4.2e-149 531.6 318 78.9
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 9.5e-149 530.4 321 78.8
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 2.1e-148 529.3 317 79.2
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 2.8e-148 528.9 316 78.2
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 3.0e-147 525.4 316 77.2
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 3.0e-147 525.4 318 76.7
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 8.9e-147 523.9 316 78.2
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 8.9e-147 523.9 317 77.3
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.5e-146 523.1 316 77.8
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.5e-146 523.1 316 77.5
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 3.4e-146 521.9 321 77.6
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 5.7e-146 521.2 317 77.6
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 5.7e-146 521.2 316 78.5
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 9.8e-146 520.4 317 77.0
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.3e-145 520.0 315 77.8
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 2.2e-145 519.2 317 77.0
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 3.7e-145 518.5 338 74.0
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 1.1e-144 516.9 369 68.8
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 1.4e-144 516.5 302 80.5
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 4.1e-144 515.0 316 75.9
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 7.0e-144 514.2 320 75.9
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.0e-142 510.4 320 75.9
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 1.7e-142 509.6 316 75.3
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.7e-142 509.6 316 74.1
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 5.0e-142 508.1 316 75.3
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 8.6e-142 507.3 316 76.3
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 2.5e-141 505.8 317 75.7
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 2.5e-141 505.8 316 74.1
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 4.3e-141 505.0 316 75.6
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 4.3e-141 505.0 317 74.8
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 5.6e-141 504.6 321 74.5
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 5.6e-141 504.6 316 75.0
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 7.3e-141 504.2 316 73.7
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 9.5e-141 503.8 318 76.1
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.2e-140 503.4 331 71.3
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.6e-140 503.1 316 74.7
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 3.6e-140 501.9 317 74.8
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 3.6e-140 501.9 316 75.0
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 3.6e-140 501.9 317 75.1
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 6.1e-140 501.1 316 73.1
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 8.0e-140 500.7 316 72.5
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 8.0e-140 500.7 318 73.0
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.0e-139 500.4 316 73.4
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.4e-139 500.0 316 74.7
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 3.0e-139 498.8 316 73.1
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 4.0e-139 498.4 316 74.4
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 4.0e-139 498.4 316 74.4
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 4.0e-139 498.4 316 74.4
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 6.8e-139 497.7 316 72.8
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 8.9e-139 497.3 316 73.1
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 8.9e-139 497.3 318 73.0
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 8.9e-139 497.3 316 71.5
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 8.9e-139 497.3 316 74.4
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.5e-138 496.5 316 72.5
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 9.8e-138 493.8 316 73.7
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 9.8e-138 493.8 317 72.9
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.7e-137 493.0 317 72.6
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 1.7e-137 493.0 316 72.5
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 2.2e-137 492.7 316 73.7
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 2.9e-137 492.3 316 73.4
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 3.7e-137 491.9 370 64.6
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 4.9e-137 491.5 316 73.1
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 4.9e-137 491.5 316 73.1
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 6.4e-137 491.1 317 73.5
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 8.3e-137 490.7 316 73.1
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.1e-136 490.3 313 72.2
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 2.4e-136 489.2 318 72.3
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 4.1e-136 488.4 317 71.3
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 5.4e-136 488.0 316 73.1
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 5.4e-136 488.0 316 74.4
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 9.2e-136 487.3 317 73.8
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 9.2e-136 487.3 316 71.5
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.2e-135 486.9 316 72.2
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.0e-135 486.1 316 72.5
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.0e-135 486.1 316 73.1
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 2.7e-135 485.7 316 71.8
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.5e-135 485.3 316 73.7
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 3.5e-135 485.3 316 71.5
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 6.0e-135 484.6 316 71.5
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 7.8e-135 484.2 316 71.8
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.0e-134 483.8 316 71.8
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 1.7e-134 483.0 318 71.1
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.5e-133 479.9 323 70.0
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.5e-133 479.2 316 70.9
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 5.6e-133 478.0 317 70.3
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 9.5e-133 477.2 316 70.3
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 9.5e-133 477.2 316 70.3
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 1.2e-132 476.9 316 71.2
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 8.0e-132 474.2 316 69.9
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 3.4e-130 468.8 318 69.5
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 7.5e-130 467.6 390 59.5
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 3.7e-129 465.3 318 68.9
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 6.4e-129 464.5 321 69.5
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.9e-128 463.0 323 68.7
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.7e-127 459.1 308 70.8
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.0e-126 455.7 316 69.9
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.0e-126 455.7 293 70.6
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.5e-125 453.4 404 58.7
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.9e-125 453.0 316 69.0
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 2.1e-124 449.5 316 67.1
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.6e-124 448.7 316 68.4
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 8.1e-124 447.6 319 69.0
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 8.9e-123 444.1 289 72.7
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 3.4e-122 442.2 316 66.5
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 5.8e-122 441.4 337 63.5
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 4.9e-121 438.3 317 66.6
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 2.7e-119 432.6 324 67.6
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 2.5e-117 426.0 290 70.7
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 3.3e-117 425.6 267 73.0
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 5.2e-115 418.3 297 67.3
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.6e-114 416.0 316 64.2
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 4.4e-114 415.2 327 62.4
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 7.8e-111 404.4 333 58.9
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 3.6e-108 395.6 337 58.2
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.8e-107 393.3 303 65.7
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 6.9e-107 391.3 322 60.6
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.5e-101 373.6 318 57.5
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.6e-100 370.2 318 58.2
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 8.1e-100 367.9 225 77.8
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.4e-99 367.1 319 55.8
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.1e-99 365.9 316 56.3
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.9e-97 359.4 293 60.8
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.6e-95 353.6 244 70.1
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 4.8e-84 315.5 199 76.9
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.8e-83 313.5 354 46.0
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 1.5e-82 310.5 185 79.5
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.8e-76 289.7 183 76.0
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 1.8e-75 287.0 218 61.0
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 3.6e-71 272.7 187 71.7
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.5e-69 266.5 306 51.3
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.2e-65 253.4 165 72.7
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 8.8e-62 241.5 151 76.2
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 7.0e-59 231.9 145 77.2
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.3e-52 211.1 140 68.6
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 6.5e-49 198.7 148 60.8
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 1.0e-41 174.9 130 63.8
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 7.2e-40 168.7 100 75.0
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.0e-37 160.6 124 62.9
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.4e-35 153.7 112 64.3
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 2.9e-33 146.7 93 73.1
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.5e-32 144.4 105 69.5
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 4.0e-30 136.3 91 71.4
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.2e-29 134.8 69 85.5
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 5.4e-27 125.9 75 70.7
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.7e-25 120.9 165 43.0
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 2.3e-25 120.6 86 64.0
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 4.3e-24 116.3 74 74.3
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 3.6e-23 113.2 67 73.1
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 4.9e-20 102.8 72 68.1
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.4e-19 101.3 57 73.7
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.7e-12 77.8 43 81.4
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.2e-11 73.6 51 68.6
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.5e-08 64.7 56 60.7
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.5e-08 64.7 80 48.8
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 2.3e-06 57.4 42 69.0


User provided reference genes

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