Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G322600 Theobroma cacao HOM05D008548 ORTHO05D010565 2.0e-68 262.3 133 100.0
Duzib251G0541 Durio zibethinus HOM05D008548 ORTHO05D010565 2.5e-50 202.2 135 80.7
Gohir.A13G088200 Gossypium hirsutum HOM05D008548 ORTHO05D010565 4.7e-49 198.0 135 79.3
Gohir.D13G085600 Gossypium hirsutum HOM05D008548 ORTHO05D010565 5.7e-47 191.0 135 77.8
Gorai.013G097500 Gossypium raimondii HOM05D008548 ORTHO05D010565 2.2e-46 189.1 135 77.8
Duzib248G0997 Durio zibethinus HOM05D008548 ORTHO05D010565 5.3e-45 184.5 134 74.6
Gorai.005G147800 Gossypium raimondii HOM05D008548 ORTHO05D010565 1.8e-40 169.5 140 70.7
Gohir.A03G106700 Gossypium hirsutum HOM05D008548 ORTHO05D010565 1.3e-38 163.3 140 68.6
Glyma.02G122800 Glycine max HOM05D008548 ORTHO05D010565 1.1e-26 123.6 139 51.1
Prupe.1G293600 Prunus persica HOM05D008548 ORTHO05D010565 1.9e-26 122.9 139 55.4
Manes.14G090400 Manihot esculenta HOM05D008548 ORTHO05D010565 1.6e-25 119.8 138 52.2
Potri.010G138001 Populus trichocarpa HOM05D008548 ORTHO05D010565 6.1e-25 117.9 142 50.0
Glyma.01G065000 Glycine max HOM05D008548 ORTHO05D010565 4.0e-24 115.2 142 50.7
Phvul.003G038200 Phaseolus vulgaris HOM05D008548 ORTHO05D010565 6.8e-24 114.4 139 48.2
Manes.06G079400 Manihot esculenta HOM05D008548 ORTHO05D010565 8.8e-24 114.0 141 53.2
VMungo1215G2679 Vigna mungo HOM05D008548 ORTHO05D010565 3.4e-23 112.1 141 49.6
Ciclev10033730m.g Citrus clementina HOM05D008548 ORTHO05D010565 5.7e-23 111.3 138 54.3
Lj2g0005577 Lotus japonicus HOM05D008548 ORTHO05D010565 2.8e-22 109.0 140 48.6
QL03p073326 Quercus lobata HOM05D008548 ORTHO05D010565 8.3e-22 107.5 133 53.4
CiPaw.06G095100 Carya illinoinensis HOM05D008548 ORTHO05D010565 1.2e-20 103.6 136 51.5
Lalb_Chr10g0099171 Lupinus albus HOM05D008548 ORTHO05D010565 2.7e-20 102.4 141 46.8
arahy.Tifrunner.gnm1.ann1.R5LUMW Arachis hypogaea HOM05D008548 ORTHO05D010565 7.7e-20 100.9 144 46.5
Nn3g17542 Nelumbo nucifera HOM05D008548 ORTHO05D010565 1.0e-19 100.5 129 48.1
Sabra08G0084500 Salix brachista HOM05D008548 ORTHO05D010565 2.9e-19 99.0 122 50.0
Medtr5g048090 Medicago truncatula HOM05D008548 ORTHO05D010565 3.3e-18 95.5 133 46.6
TWI79G1579 Tripterygium wilfordii HOM05D008548 ORTHO05D010565 3.3e-18 95.5 135 45.9
TPR.G38502 Trifolium pratense HOM05D008548 ORTHO05D010565 5.5e-18 94.7 138 46.4
CANSAT64G1261 Cannabis sativa HOM05D008548 ORTHO05D010565 3.6e-17 92.0 142 49.3
CiPaw.05G121500 Carya illinoinensis HOM05D008548 ORTHO05D010565 6.1e-17 91.3 139 43.2
Haze_11858 Corylus avellana HOM05D003025 ORTHO05D003305 8.0e-17 90.9 99 53.5
Rhsim09G0122000 Rhododendron simsii HOM05D008548 ORTHO05D010565 8.0e-17 90.9 142 43.7
Cpa.g.sc1.170 Carica papaya HOM05D008548 ORTHO05D010565 1.4e-16 90.1 136 49.3
Rhsim12G0071200 Rhododendron simsii HOM05D008548 ORTHO05D010565 1.8e-16 89.7 143 44.1
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.0e-16 89.0 108 48.1
MD13G1056400 Malus domestica HOM05D008548 ORTHO05D010565 2.0e-15 86.3 143 46.9
MD16G1055300 Malus domestica HOM05D008548 ORTHO05D010565 5.7e-15 84.7 134 47.0
Solyc05g011825.2 Solanum lycopersicum HOM05D008548 ORTHO05D010565 1.7e-14 83.2 90 50.0
PGR119G2115 Punica granatum HOM05D008548 ORTHO05D010565 4.9e-14 81.6 127 38.6
Psat2g090800 Pisum sativum HOM05D008548 ORTHO05D010565 1.4e-13 80.1 129 42.6
Sopen05g006580 Solanum pennellii HOM05D001549 ORTHO05D003098 1.8e-13 79.7 94 51.1
FvH4_4g29280 Fragaria vesca HOM05D023608 ORTHO05D010565 2.4e-13 79.3 141 44.0
FAN12G2598 Fragaria x ananassa HOM05D023608 ORTHO05D010565 2.4e-13 79.3 141 44.0
FAN22G1173 Fragaria x ananassa HOM05D023608 ORTHO05D010565 1.2e-12 77.0 142 42.3
FAN17G1069 Fragaria x ananassa HOM05D023608 ORTHO05D010565 1.6e-12 76.6 147 46.3
Lalb_Chr17g0341471 Lupinus albus HOM05D008548 ORTHO05D010565 5.9e-12 74.7 131 39.7
vmacro01297 Vaccinium macrocarpon HOM05D008548 ORTHO05D010565 2.3e-11 72.8 74 51.4
arahy.Tifrunner.gnm1.ann1.BD088N Arachis hypogaea HOM05D008548 ORTHO05D010565 2.9e-11 72.4 141 39.0
arahy.Tifrunner.gnm1.ann1.Y4YZ09 Arachis hypogaea HOM05D008548 ORTHO05D010565 6.6e-11 71.2 141 39.0
DCAR_026688 Daucus carota HOM05D008548 ORTHO05D010565 8.6e-11 70.9 132 40.2
Gohir.D02G131900 Gossypium hirsutum HOM05D008548 ORTHO05D010565 3.3e-10 68.9 61 68.9
Sed0002945 Sechium edule HOM05D024428 ORTHO05D025076 7.3e-10 67.8 129 41.9
SGA_v2.0_scaffold287G47189 Striga asiatica HOM05D003025 ORTHO05D003305 1.6e-09 66.6 129 36.4
ClCG05G023540 Citrullus lanatus HOM05D024428 ORTHO05D025076 2.1e-09 66.2 131 36.6
Aqoxy3G00550 Aquilegia oxysepala HOM05D008548 ORTHO05D010565 2.8e-09 65.9 118 39.0
PGSC0003DMG400019660 Solanum tuberosum HOM05D008548 ORTHO05D010565 4.7e-09 65.1 49 61.2
PSO017G3531 Papaver somniferum HOM05D049557 ORTHO05D010565 1.0e-08 63.9 89 41.6
SalBow2G1954 Salvia bowleyana HOM05D008548 ORTHO05D010565 2.3e-08 62.8 134 35.8
FAN07G0570 Fragaria x ananassa HOM05D023608 ORTHO05D010565 4.0e-08 62.0 147 36.1
Lsat_1_v5_gn_3_104501 Lactuca sativa HOM05D008548 ORTHO05D010565 8.9e-08 60.8 77 44.2
CsaV3_5G033480 Cucumis sativus L. HOM05D024428 ORTHO05D025076 1.5e-07 60.1 123 38.2
Peaxi162Scf00188g01031 Petunia axillaris HOM05D008548 ORTHO05D010565 2.6e-07 59.3 32 78.1
THA.LOC104805214 Tarenaya hassleriana HOM05D011384 ORTHO05D013461 4.4e-07 58.5 134 35.1
Lsat_1_v5_gn_8_37041 Lactuca sativa HOM05D037328 ORTHO05D036346 2.2e-06 56.2 104 42.3
Lsat_1_v5_gn_4_16601 Lactuca sativa HOM05D037328 ORTHO05D036346 4.9e-06 55.1 102 34.3
Sp2g14640 Schrenkiella parvula HOM05D011384 ORTHO05D013461 4.9e-06 55.1 136 36.0


User provided reference genes

Program Settings