Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G319500 Theobroma cacao HOM05D008138 ORTHO05D010043 1.1e-66 256.5 131 100.0
Cpa.g.sc53.120 Carica papaya HOM05D008138 ORTHO05D010043 6.0e-25 117.9 101 58.4
Glyma.01G069000 Glycine max HOM05D008138 ORTHO05D010043 2.8e-22 109.0 91 61.5
Glyma.02G125900 Glycine max HOM05D008138 ORTHO05D010043 5.3e-21 104.8 91 58.2
Lj2g0015438 Lotus japonicus HOM05D008138 ORTHO05D010043 1.5e-20 103.2 120 48.3
GSVIVG01010138001 Vitis vinifera HOM05D008138 ORTHO05D010043 3.4e-20 102.1 103 51.5
Sed0002378 Sechium edule HOM05D008138 ORTHO05D010043 1.7e-19 99.8 99 55.6
ClCG05G023400 Citrullus lanatus HOM05D008138 ORTHO05D010043 2.2e-19 99.4 112 49.1
GSVIVG01010131001 Vitis vinifera HOM05D008138 ORTHO05D010043 2.5e-18 95.9 96 54.2
QL08p042110 Quercus lobata HOM05D008138 ORTHO05D010043 2.3e-16 89.4 114 44.7
TPR.G2576 Trifolium pratense HOM05D008138 ORTHO05D010043 2.3e-16 89.4 92 48.9
Gorai.013G098900 Gossypium raimondii HOM05D033109 ORTHO05D010043 1.9e-15 86.3 64 68.8
Potri.013G126000 Populus trichocarpa HOM05D008138 ORTHO05D010043 2.5e-15 85.9 87 46.0
Cpa.g.sc9.360 Carica papaya HOM05D008138 ORTHO05D010043 4.3e-15 85.1 89 48.3
QL10p055344 Quercus lobata HOM05D008138 ORTHO05D010043 9.6e-15 84.0 85 50.6
Gohir.A13G091345 Gossypium hirsutum HOM05D033109 ORTHO05D010043 1.3e-14 83.6 65 66.2
Rhsim09G0118800 Rhododendron simsii HOM05D008138 ORTHO05D010043 2.8e-14 82.4 85 50.6
QL10p055339 Quercus lobata HOM05D008138 ORTHO05D010043 1.1e-13 80.5 102 44.1
CSS0008104 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 1.8e-13 79.7 101 41.6
Sabra13G0105400 Salix brachista HOM05D008138 ORTHO05D010043 3.1e-13 79.0 89 43.8
CSS0008280 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 6.9e-13 77.8 102 41.2
CSS0015628 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 6.9e-13 77.8 102 41.2
Prupe.1G297700 Prunus persica HOM05D008138 ORTHO05D010043 9.0e-13 77.4 93 49.5
CSS0025185 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 1.2e-12 77.0 102 40.2
CSS0030227 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 1.2e-12 77.0 102 40.2
Rhsim09G0118100 Rhododendron simsii HOM05D008138 ORTHO05D010043 1.2e-12 77.0 87 46.0
CSS0046654 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 1.5e-12 76.6 102 41.2
CSS0048436 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 2.0e-12 76.3 102 40.2
TAR629G0219 Trochodendron aralioides HOM05D008138 ORTHO05D010043 2.0e-12 76.3 96 47.9
Eucgr.B03099 Eucalyptus grandis HOM05D008138 ORTHO05D010043 2.6e-12 75.9 89 44.9
Nn3g17583 Nelumbo nucifera HOM05D008138 ORTHO05D010043 2.6e-12 75.9 94 39.4
QL10p055072 Quercus lobata HOM05D008138 ORTHO05D010043 4.5e-12 75.1 89 49.4
CSS0039010 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 5.9e-12 74.7 102 39.2
CsaV3_5G033610 Cucumis sativus L. HOM05D008138 ORTHO05D010043 5.9e-12 74.7 71 54.9
Nn4g23585 Nelumbo nucifera HOM05D008138 ORTHO05D010043 7.6e-12 74.3 94 41.5
Sed0011337 Sechium edule HOM05D022360 ORTHO05D010043 1.0e-11 73.9 100 46.0
ClCG01G007380 Citrullus lanatus HOM05D022360 ORTHO05D010043 1.3e-11 73.6 108 42.6
CsaV3_5G018850 Cucumis sativus L. HOM05D022360 ORTHO05D034989 1.3e-11 73.6 108 41.7
QL10p055198 Quercus lobata HOM05D008138 ORTHO05D010043 1.3e-11 73.6 83 49.4
Dinv01548 Davidia involucrata HOM05D008138 ORTHO05D010043 1.7e-11 73.2 115 39.1
QL10p055376 Quercus lobata HOM05D008138 ORTHO05D010043 1.7e-11 73.2 106 39.6
QL10p055255 Quercus lobata HOM05D008138 ORTHO05D010043 6.5e-11 71.2 105 37.1
CSS0004656 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 8.4e-11 70.9 102 38.2
CSS0022599 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 1.9e-10 69.7 106 37.7
QL10p055147 Quercus lobata HOM05D008138 ORTHO05D010043 2.5e-10 69.3 88 42.0
QL10p055293 Quercus lobata HOM05D008138 ORTHO05D010043 3.2e-10 68.9 85 42.4
Eucgr.G01572 Eucalyptus grandis HOM05D008138 ORTHO05D010043 3.5e-09 65.5 100 38.0
Gohir.D13G086800 Gossypium hirsutum HOM05D033109 ORTHO05D010043 3.5e-09 65.5 50 70.0
Ciclev10022667m.g Citrus clementina HOM05D017113 ORTHO05D019028 6.1e-09 64.7 107 38.3
Eucgr.G02403 Eucalyptus grandis HOM05D008138 ORTHO05D010043 6.1e-09 64.7 100 38.0
TAR629G0644 Trochodendron aralioides HOM05D008138 ORTHO05D010043 1.0e-08 63.9 96 38.5
Nn1g02864 Nelumbo nucifera HOM05D008138 ORTHO05D010043 1.8e-08 63.2 107 36.4
Atru.chr4.1346 Acer truncatum HOM05D058995 ORTHO05D010043 2.3e-08 62.8 102 38.2
Dinv33884 Davidia involucrata HOM05D008138 ORTHO05D010043 2.3e-08 62.8 88 34.1
Dinv16583 Davidia involucrata HOM05D008138 ORTHO05D010043 3.0e-08 62.4 73 43.8
Duzib151G0273 Durio zibethinus HOM05D008138 ORTHO05D010043 3.0e-08 62.4 97 35.1
QL10p054634 Quercus lobata HOM05D008138 ORTHO05D010043 3.0e-08 62.4 91 38.5
Ciclev10022611m.g Citrus clementina HOM05D017113 ORTHO05D019028 3.9e-08 62.0 111 37.8
Eucgr.G01398 Eucalyptus grandis HOM05D008138 ORTHO05D010043 5.1e-08 61.6 100 35.0
CSS0022846 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 6.7e-08 61.2 118 30.5
CSS0029791 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 8.7e-08 60.8 118 30.5
Cfa007720 Carpinus fangiana HOM05D008138 ORTHO05D010043 1.1e-07 60.5 87 35.6
Sc11g0003000 Simmondsia chinensis HOM05D049521 ORTHO05D010043 1.9e-07 59.7 110 37.3
Haze_14354 Corylus avellana HOM05D008138 ORTHO05D010043 2.5e-07 59.3 87 35.6
QL10p055607 Quercus lobata HOM05D008138 ORTHO05D010043 2.5e-07 59.3 88 42.0
RhsimUnG0060000 Rhododendron simsii HOM05D009462 ORTHO05D013623 2.5e-07 59.3 120 36.7
RhsimUnG0062800 Rhododendron simsii HOM05D009462 ORTHO05D013623 3.3e-07 58.9 114 38.6
Nn3g17585 Nelumbo nucifera HOM05D008138 ORTHO05D010043 5.7e-07 58.2 101 33.7
Sc11g0003020 Simmondsia chinensis HOM05D049521 ORTHO05D010043 9.7e-07 57.4 91 38.5
Ciclev10022666m.g Citrus clementina HOM05D017113 ORTHO05D019028 1.3e-06 57.0 107 38.3
Ciclev10022615m.g Citrus clementina HOM05D017113 ORTHO05D019028 1.6e-06 56.6 111 35.1
Manes.04G036300 Manihot esculenta HOM05D008138 ORTHO05D010043 2.2e-06 56.2 108 36.1
Ciclev10033630m.g Citrus clementina HOM05D008138 ORTHO05D010043 4.8e-06 55.1 88 37.5


User provided reference genes

Program Settings