Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 3.3e-150 535.0 271 100.0
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 3.9e-135 485.0 274 90.5
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 3.2e-129 465.3 271 86.3
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 5.4e-129 464.5 271 86.3
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 1.1e-126 456.8 271 86.0
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 3.7e-109 398.7 271 73.4
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 3.7e-109 398.7 271 73.4
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 3.1e-108 395.6 271 70.8
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 3.8e-106 388.7 271 70.8
CiPaw.06G096100 Carya illinoinensis HOM05D006853 ORTHO05D008906 5.5e-105 384.8 272 69.1
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 6.7e-103 377.9 272 68.8
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 1.5e-102 376.7 271 70.5
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 1.9e-102 376.3 272 68.8
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 3.3e-102 375.6 271 67.9
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 1.3e-101 373.6 247 73.3
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 1.2e-99 367.1 272 68.0
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 3.2e-97 359.0 272 65.8
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 7.2e-97 357.8 271 67.2
CSS0047872 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 1.2e-96 357.1 273 67.0
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 2.7e-96 355.9 272 66.5
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 2.7e-96 355.9 271 66.8
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 6.1e-96 354.8 253 69.6
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 2.3e-95 352.8 271 64.6
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 3.0e-95 352.4 273 64.5
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 3.0e-95 352.4 271 64.9
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 8.8e-95 350.9 273 65.2
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 1.9e-94 349.7 271 63.8
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 4.3e-94 348.6 255 67.5
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 7.4e-94 347.8 272 66.5
Hma1.2p1_0762F.1_g214380 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 1.3e-93 347.1 272 64.3
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 1.7e-93 346.7 273 65.6
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 1.8e-92 343.2 272 64.0
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 3.1e-92 342.4 271 63.1
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 6.9e-92 341.3 271 62.0
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 1.2e-91 340.5 271 63.1
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 1.5e-91 340.1 271 62.0
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 1.3e-90 337.0 273 63.7
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 5.0e-90 335.1 271 63.5
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 8.5e-90 334.3 271 62.4
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 2.5e-89 332.8 274 63.5
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 4.2e-89 332.0 271 63.1
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 7.2e-89 331.3 273 63.4
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 9.4e-89 330.9 271 62.4
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 3.6e-88 328.9 274 62.4
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 1.8e-87 326.6 273 64.1
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 2.3e-87 326.2 274 61.7
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 5.1e-87 325.1 271 59.0
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 6.7e-87 324.7 271 61.6
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 8.8e-87 324.3 274 62.8
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 1.1e-86 323.9 271 60.9
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 2.0e-86 323.2 247 66.4
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 2.6e-86 322.8 274 61.3
Sc11g0002760 Simmondsia chinensis HOM05D006853 ORTHO05D008906 2.6e-86 322.8 271 62.0
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 1.3e-85 320.5 272 62.5
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 2.2e-85 319.7 272 62.9
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 2.8e-85 319.3 271 61.3
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 2.8e-85 319.3 271 61.3
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 3.7e-85 318.9 271 60.9
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 7.7e-83 311.2 276 60.9
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 7.7e-83 311.2 276 60.9
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 1.0e-82 310.8 274 60.2
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 2.9e-82 309.3 271 59.4
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 8.5e-82 307.8 278 59.7
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 8.5e-82 307.8 278 59.7
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 1.9e-81 306.6 245 59.2
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 3.2e-81 305.8 255 59.6
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 2.3e-79 299.7 271 54.6
Prupe.1G299000 Prunus persica HOM05D006853 ORTHO05D006634 3.0e-79 299.3 251 62.9
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 3.3e-78 295.8 273 58.2
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 7.4e-78 294.7 271 55.7
PSO675G5986 Papaver somniferum HOM05D006853 ORTHO05D008906 7.4e-78 294.7 273 58.6
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 2.2e-77 293.1 214 67.3
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 2.2e-77 293.1 248 60.9
MD16G1052100 Malus domestica HOM05D006853 ORTHO05D008906 1.6e-75 287.0 281 56.9
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 2.6e-75 286.2 279 56.6
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 4.5e-75 285.4 277 56.3
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 4.5e-75 285.4 277 56.3
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 1.0e-74 284.3 273 56.4
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 2.9e-74 282.7 200 68.5
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 3.2e-73 279.3 274 56.9
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 1.4e-71 273.9 277 55.6
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 1.5e-70 270.4 277 55.2
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 2.0e-70 270.0 218 59.6
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 7.5e-70 268.1 273 56.0
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 2.9e-66 256.1 273 52.0
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 3.6e-64 249.2 239 58.2
unitig_8.g3212 Utricularia gibba HOM05D006853 ORTHO05D008906 7.5e-62 241.5 271 49.1
Ca_05156_v3 Cicer arietinum L. HOM05D006853 ORTHO05D008906 8.3e-61 238.0 270 48.5
SHI15728 Sapria himalayana HOM05D006853 ORTHO05D008906 1.6e-59 233.8 261 52.1
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 7.2e-57 224.9 269 46.8
Medtr5g049260 Medicago truncatula HOM05D006853 ORTHO05D008906 1.8e-55 220.3 271 46.9
Medtr5g049270 Medicago truncatula HOM05D006853 ORTHO05D008906 1.8e-55 220.3 271 46.9
Lalb_Chr17g0341651 Lupinus albus HOM05D006853 ORTHO05D008906 4.0e-55 219.2 272 46.3
Glyma.02G127200 Glycine max HOM05D006853 ORTHO05D008906 8.9e-55 218.0 271 49.1
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 1.5e-54 217.2 273 44.0
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 4.4e-54 215.7 269 46.1
Glyma.01G070150 Glycine max HOM05D006853 ORTHO05D008906 3.7e-53 212.6 271 48.3
GSVIVG01010168001 Vitis vinifera HOM05D000044 ORTHO05D006634 1.1e-52 211.1 245 49.0
Hma1.2p1_0125F.1_g058490 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 5.4e-52 208.8 172 62.2
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 2.0e-51 206.8 273 46.2
Lj2g0007836 Lotus japonicus HOM05D000044 ORTHO05D006634 3.5e-51 206.1 260 45.4
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 7.3e-49 198.4 234 49.1
arahy.Tifrunner.gnm1.ann1.N8UYM2 Arachis hypogaea HOM05D006853 ORTHO05D008906 3.6e-48 196.1 272 44.1
C09p31840 Brassica napus HOM05D006853 ORTHO05D008906 1.8e-47 193.7 200 53.0
BcaC04g21430 Brassica carinata HOM05D006853 ORTHO05D008906 4.0e-47 192.6 200 52.5
arahy.Tifrunner.gnm1.ann1.QR8D6Y Arachis hypogaea HOM05D006853 ORTHO05D008906 7.0e-44 181.8 244 43.9
Pp3c1_39830 Physcomitrium patens HOM05D006853 ORTHO05D008906 3.9e-34 149.4 238 37.8
AL5G13960 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 2.0e-30 137.1 88 72.7
SMO164G0046 Selaginella moellendorffii HOM05D006853 ORTHO05D008906 2.6e-30 136.7 223 39.9
CDE03G0412 Ceratophyllum demersum HOM05D001926 ORTHO05D002121 9.2e-28 128.3 156 45.5
Os01g0219000 Oryza sativa ssp. japonica HOM05D006853 ORTHO05D008906 6.6e-26 122.1 225 39.6
Mapoly0008s0082 Marchantia polymorpha HOM05D006853 ORTHO05D008906 2.5e-25 120.2 250 35.2
Zm00001eb119820 Zea mays HOM05D006853 ORTHO05D008906 9.5e-25 118.2 219 36.5
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 1.6e-24 117.5 226 35.8
Psat2g098640 Pisum sativum HOM05D006853 ORTHO05D008906 8.9e-23 111.7 122 48.4
HanXRQChr12g0364531 Helianthus annuus HOM05D006853 ORTHO05D008906 1.4e-20 104.4 110 49.1
Psat1g127240 Pisum sativum HOM05D002500 ORTHO05D002587 1.4e-20 104.4 112 50.0
ATR0737G064 Amborella trichopoda HOM05D006853 ORTHO05D008906 2.3e-18 97.1 102 48.0
Cre01.g037650 Chlamydomonas reinhardtii HOM05D006853 ORTHO05D008906 9.3e-12 75.1 219 32.4
GSVIVG01017445001 Vitis vinifera HOM05D000518 ORTHO05D001974 2.7e-11 73.6 62 50.0
PSO478G3347 Papaver somniferum HOM05D006853 ORTHO05D008906 4.6e-11 72.8 54 61.1
BraA09t38070Z Brassica rapa HOM05D006853 ORTHO05D008906 9.0e-07 58.5 41 65.9


User provided reference genes

Program Settings