Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 8.3e-224 780.0 387 100.0
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 2.8e-171 605.5 388 79.1
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.4e-167 593.2 384 79.9
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 9.7e-156 553.9 388 75.5
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 4.1e-146 521.9 403 69.7
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 5.9e-145 518.1 408 69.9
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.5e-143 512.7 409 69.2
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.6e-140 502.7 407 68.3
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.1e-135 487.3 407 70.5
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 5.0e-120 435.3 426 59.4
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.8e-118 429.5 389 62.7
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 6.4e-115 418.3 402 62.4
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 6.4e-115 418.3 402 62.4
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.6e-112 408.3 400 57.5
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 1.9e-111 406.8 402 60.7
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.8e-110 402.9 380 62.6
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.8e-110 402.9 380 62.6
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.2e-110 401.7 380 62.9
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 4.4e-108 395.6 384 58.9
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 7.5e-108 394.8 380 61.8
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 3.1e-101 372.9 391 57.5
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 5.8e-100 368.6 396 57.8
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.7e-99 367.1 396 57.6
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 2.2e-99 366.7 402 56.2
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.4e-98 364.0 391 55.2
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 3.2e-98 362.8 426 52.8
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.5e-97 359.4 396 56.8
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 7.8e-97 358.2 402 54.2
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.0e-96 357.8 404 52.5
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.9e-96 355.9 396 55.6
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 5.1e-96 355.5 392 53.6
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.1e-93 347.8 427 50.6
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 4.0e-93 345.9 403 54.6
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.3e-91 340.9 392 55.9
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.3e-91 340.9 392 55.9
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.7e-91 340.5 396 55.6
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.1e-90 337.8 390 54.1
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 2.5e-87 326.6 399 49.1
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 6.2e-86 322.0 405 48.4
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 3.1e-85 319.7 390 53.3
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 3.1e-85 319.7 339 55.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 4.0e-85 319.3 384 52.9
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 6.9e-85 318.5 376 52.1
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 2.6e-84 316.6 392 51.5
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.4e-84 316.2 392 53.1
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.3e-83 314.3 409 48.2
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.7e-83 313.9 418 48.1
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.7e-83 313.9 384 50.5
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 6.4e-83 312.0 383 52.2
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 8.4e-83 311.6 389 50.1
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 1.1e-82 311.2 411 48.4
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.4e-82 310.1 417 47.0
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.2e-82 309.3 403 48.6
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 9.3e-82 308.1 418 46.7
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 3.3e-79 299.7 421 46.6
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 2.1e-78 297.0 423 47.3
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 2.0e-76 290.4 403 48.1
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 7.1e-74 282.0 395 46.1
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 9.3e-74 281.6 387 45.5
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.5e-73 279.6 388 45.1
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.3e-72 276.9 377 47.5
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 6.7e-72 275.4 383 48.3
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.9e-71 273.9 397 47.4
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 8.2e-70 268.5 373 47.5
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 2.6e-68 263.5 423 44.7
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.8e-64 250.8 424 43.9
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 2.3e-64 250.4 428 43.0
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.5e-63 247.7 382 41.1
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 4.8e-62 242.7 253 58.9
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 8.2e-62 241.9 391 45.3
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.1e-61 241.5 382 43.2
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 1.1e-61 241.5 242 58.3
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 6.9e-61 238.8 382 42.1
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.2e-60 238.0 381 43.0
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.0e-59 235.0 391 41.4
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.7e-59 234.2 313 47.0
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.9e-59 233.4 425 40.5
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 5.0e-59 232.6 391 42.5
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.2e-57 228.0 465 39.1
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.8e-56 224.2 398 39.7
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.5e-55 221.1 464 39.4
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 8.2e-54 215.3 425 38.1
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.4e-53 214.5 473 36.8
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.1e-53 213.0 381 40.4
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.1e-53 213.0 381 40.4
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 4.5e-52 209.5 387 38.2
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.7e-51 207.6 384 40.4
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 8.5e-51 205.3 416 37.7
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.1e-50 204.9 383 40.7
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.1e-50 204.9 383 38.6
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 1.4e-50 204.5 382 38.2
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 7.2e-50 202.2 382 37.2
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 9.4e-50 201.8 378 38.1
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.6e-49 201.1 400 40.2
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 2.1e-49 200.7 382 37.2
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 2.7e-49 200.3 396 38.6
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 9.7e-47 191.8 407 35.6
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 9.7e-47 191.8 388 39.4
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 5.3e-45 186.0 464 35.1
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 5.3e-45 186.0 386 39.1
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 2.6e-44 183.7 432 34.0
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 3.5e-44 183.3 432 34.7
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 4.5e-44 183.0 413 35.8
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.3e-43 181.4 462 33.8
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 8.5e-43 178.7 391 38.4
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 8.5e-43 178.7 360 37.8
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 8.5e-43 178.7 389 36.8
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-42 178.3 433 33.7
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.4e-42 177.9 426 34.5
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-42 177.6 433 33.7
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.6e-41 174.5 402 35.8
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.6e-41 174.5 433 33.5
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.1e-41 174.1 416 36.1
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 3.6e-41 173.3 390 36.9
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 3.6e-41 173.3 390 36.9
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 8.0e-41 172.2 393 34.6
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 8.0e-41 172.2 393 34.6
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.4e-40 171.4 381 36.5
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 3.0e-40 170.2 265 40.8
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.0e-39 167.5 378 33.9
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 1.1e-37 161.8 406 35.0
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 3.1e-37 160.2 375 34.1
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 7.0e-37 159.1 394 34.3
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.2e-36 158.3 416 33.7
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.2e-36 158.3 394 34.3
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 2.6e-36 157.1 406 34.5
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 2.5e-34 150.6 464 32.8
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 9.4e-34 148.7 108 71.3
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 2.7e-33 147.1 410 32.7
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 3.6e-33 146.7 397 33.5
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 6.8e-32 142.5 437 33.0
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.2e-31 141.7 319 38.6
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 2.0e-31 141.0 428 32.0
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 2.0e-31 141.0 379 34.6
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 5.7e-31 139.4 451 30.8
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 5.7e-31 139.4 191 44.5
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-30 137.9 321 37.7
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 1.7e-30 137.9 392 32.1
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 6.3e-30 136.0 303 35.6
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 8.3e-30 135.6 231 41.6
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 4.1e-29 133.3 207 40.6
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.0e-27 128.6 380 33.2
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 5.0e-27 126.3 446 31.4
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.9e-26 124.4 287 39.4
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 3.0e-24 117.1 216 41.2
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 9.8e-23 112.1 407 30.5
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 5.0e-19 99.8 316 32.3
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.5e-15 88.2 174 39.7
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 3.4e-15 87.0 196 34.7
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 9.8e-15 85.5 122 42.6
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 8.3e-14 82.4 142 40.8
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.2e-12 78.6 118 39.0
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.6e-12 78.2 109 45.9
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 8.6e-11 72.4 160 35.6
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 2.1e-09 67.8 82 50.0
Haze_13037 Corylus avellana HOM05D004568 ORTHO05D005343 1.8e-08 64.7 74 52.7
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 2.9e-06 57.4 149 31.5
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 4.9e-06 56.6 79 43.0
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 6.4e-06 56.2 81 40.7
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 8.3e-06 55.8 75 44.0


User provided reference genes

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