Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G314100 Theobroma cacao HOM05D008160 ORTHO05D009635 1.3e-76 289.7 148 100.0
Thecc.02G314300 Theobroma cacao HOM05D008160 ORTHO05D009635 1.0e-36 157.1 149 61.7
Gohir.A03G108800 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.8e-34 149.1 164 56.1
Gorai.005G149800 Gossypium raimondii HOM05D008160 ORTHO05D009635 2.8e-34 149.1 164 56.1
Gohir.D02G133900 Gossypium hirsutum HOM05D008160 ORTHO05D009635 3.6e-34 148.7 165 55.8
COL.COLO4_27706 Corchorus olitorius HOM05D008160 ORTHO05D009635 2.6e-32 142.5 151 58.3
QL06p012138 Quercus lobata HOM05D008160 ORTHO05D009635 9.2e-30 134.0 148 52.7
QL08p033125 Quercus lobata HOM05D008160 ORTHO05D009635 9.2e-30 134.0 148 52.7
Gohir.D13G088500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 1.5e-27 126.7 151 54.3
Gorai.013G101200 Gossypium raimondii HOM05D008160 ORTHO05D009635 2.1e-26 122.9 149 51.7
Gohir.A13G094500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.8e-26 122.5 151 53.6
TWI75G1754 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 1.3e-23 113.6 151 47.7
TWI36G0727 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 9.2e-22 107.5 147 46.3
TAR624G1256 Trochodendron aralioides HOM05D008160 ORTHO05D009635 6.0e-21 104.8 148 46.6
Potri.014G153200 Populus trichocarpa HOM05D008160 ORTHO05D009635 6.6e-20 101.3 159 45.9
Dinv05432 Davidia involucrata HOM05D008160 ORTHO05D009635 8.6e-20 100.9 136 47.1
TAR626G0785 Trochodendron aralioides HOM05D008160 ORTHO05D009635 9.5e-19 97.4 147 42.9
Lj3g0006762 Lotus japonicus HOM05D008160 ORTHO05D009635 1.2e-18 97.1 148 44.6
TPR.G4649 Trifolium pratense HOM05D008160 ORTHO05D009635 1.2e-18 97.1 147 41.5
Cfa014402 Carpinus fangiana HOM05D008160 ORTHO05D009635 2.1e-18 96.3 157 42.7
Glyma.06G305400 Glycine max HOM05D008160 ORTHO05D009635 4.7e-18 95.1 149 39.6
CiPaw.03G160200 Carya illinoinensis HOM05D008160 ORTHO05D009635 8.1e-18 94.4 153 43.8
MD09G1108700 Malus domestica HOM05D008160 ORTHO05D009635 1.4e-17 93.6 153 41.2
Manes.12G074700 Manihot esculenta HOM05D008160 ORTHO05D009635 2.3e-17 92.8 150 43.3
Prupe.3G217400 Prunus persica HOM05D008160 ORTHO05D009635 2.3e-17 92.8 151 39.7
CiPaw.04G116300 Carya illinoinensis HOM05D008160 ORTHO05D009635 3.1e-17 92.4 154 46.8
Haze_12867 Corylus avellana HOM05D008160 ORTHO05D009635 6.8e-17 91.3 95 54.7
Medtr4g048060 Medicago truncatula HOM05D008160 ORTHO05D009635 4.4e-16 88.6 149 41.6
Cpa.g.sc8.214 Carica papaya HOM05D008160 ORTHO05D009635 1.7e-15 86.7 153 39.9
Sabra02G0175400 Salix brachista HOM05D008160 ORTHO05D009635 2.2e-15 86.3 155 41.9
Potri.002G229300 Populus trichocarpa HOM05D008160 ORTHO05D009635 2.9e-15 85.9 155 40.0
Nn1g03539 Nelumbo nucifera HOM05D008160 ORTHO05D009635 4.9e-15 85.1 147 40.8
Lalb_Chr03g0028751 Lupinus albus HOM05D008160 ORTHO05D009635 8.3e-15 84.3 125 41.6
Glyma.12G099100 Glycine max HOM05D008160 ORTHO05D009635 2.4e-14 82.8 150 42.0
Psat7g157360 Pisum sativum HOM05D008160 ORTHO05D009635 3.2e-14 82.4 147 38.8
CANSAT64G2131 Cannabis sativa HOM05D008160 ORTHO05D009635 1.2e-13 80.5 166 40.4
Ca_26933_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 1.6e-13 80.1 147 40.1
Hma1.2p1_0328F.1_g126920 Hydrangea macrophylla HOM05D008160 ORTHO05D009635 2.1e-13 79.7 78 59.0
FAN09G3148 Fragaria x ananassa HOM05D008160 ORTHO05D009635 3.5e-13 79.0 161 41.0
ClCG02G008690 Citrullus lanatus HOM05D008160 ORTHO05D009635 6.0e-13 78.2 143 37.8
Lalb_Chr19g0135851 Lupinus albus HOM05D008160 ORTHO05D009635 6.0e-13 78.2 157 37.6
CsaV3_2G034970 Cucumis sativus L. HOM05D008160 ORTHO05D009635 1.7e-12 76.6 149 40.3
MELO3C019266.2 Cucumis melo HOM05D008160 ORTHO05D009635 3.9e-12 75.5 156 38.5
FvH4_6g43200 Fragaria vesca HOM05D008160 ORTHO05D009635 3.9e-12 75.5 161 40.4
FAN02G3260 Fragaria x ananassa HOM05D008160 ORTHO05D009635 3.9e-12 75.5 161 41.0
RcHm_v2.0_Chr2g0159311 Rosa chinensis HOM05D008160 ORTHO05D009635 5.1e-12 75.1 160 38.8
RcHm_v2.0_Chr2g0159421 Rosa chinensis HOM05D008160 ORTHO05D009635 8.6e-12 74.3 160 38.1
TPR.G4242 Trifolium pratense HOM05D008160 ORTHO05D009635 1.1e-11 73.9 150 33.3
Glyma.13G308600 Glycine max HOM05D008160 ORTHO05D009635 1.9e-11 73.2 148 37.8
Eucgr.A01130 Eucalyptus grandis HOM05D008160 ORTHO05D009635 5.6e-11 71.6 152 40.8
Ciclev10017235m.g Citrus clementina HOM05D008160 ORTHO05D009635 9.5e-11 70.9 79 51.9
VMungo1127G0429 Vigna mungo HOM05D008160 ORTHO05D009635 9.5e-11 70.9 149 35.6
LjContig00412g0003580 Lotus japonicus HOM05D008160 ORTHO05D009635 1.6e-10 70.1 148 36.5
Phvul.011G104000 Phaseolus vulgaris HOM05D008160 ORTHO05D009635 3.6e-10 68.9 147 37.4
Ca_01599_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 4.0e-09 65.5 143 34.3
FAN10G1253 Fragaria x ananassa HOM05D008160 ORTHO05D009635 5.2e-09 65.1 161 37.3
FAN14G2424 Fragaria x ananassa HOM05D008160 ORTHO05D009635 5.2e-09 65.1 161 37.3
Glyma.12G193900 Glycine max HOM05D008160 ORTHO05D009635 1.2e-08 63.9 110 41.8
Nn5g29373 Nelumbo nucifera HOM05D008160 ORTHO05D009635 3.4e-08 62.4 146 36.3
Sp3g19690 Schrenkiella parvula HOM05D010757 ORTHO05D009635 3.4e-08 62.4 91 45.1
A01p33300 Brassica napus HOM05D010757 ORTHO05D009635 1.3e-07 60.5 85 45.9
PGR042G1178 Punica granatum HOM05D008160 ORTHO05D009635 1.3e-07 60.5 103 39.8
CARHR097620 Cardamine hirsuta HOM05D010757 ORTHO05D009635 2.9e-07 59.3 116 35.3
PGSC0003DMG400028963 Solanum tuberosum HOM05D046998 ORTHO05D009635 2.9e-07 59.3 167 32.9
AL3G35800 Arabidopsis lyrata HOM05D010757 ORTHO05D009635 3.8e-07 58.9 87 41.4
C01p42560 Brassica napus HOM05D010757 ORTHO05D009635 3.8e-07 58.9 85 44.7
BolC1t04209H Brassica oleracea HOM05D010757 ORTHO05D009635 3.8e-07 58.9 85 44.7
BraA01t03447Z Brassica rapa HOM05D010757 ORTHO05D009635 3.8e-07 58.9 85 44.7
BraA01t03448Z Brassica rapa HOM05D010757 ORTHO05D009635 3.8e-07 58.9 85 44.7
Atru.chr6.3179 Acer truncatum HOM05D008160 ORTHO05D009635 4.9e-07 58.5 87 43.7
ATR0661G403 Amborella trichopoda HOM05D008160 ORTHO05D009635 4.9e-07 58.5 97 36.1
AT3G21680 Arabidopsis thaliana HOM05D010757 ORTHO05D009635 6.4e-07 58.2 152 34.9
Carub.0003s2173 Capsella rubella HOM05D010757 ORTHO05D009635 8.4e-07 57.8 108 32.4
Sed0017088 Sechium edule HOM05D008160 ORTHO05D009635 8.4e-07 57.8 121 37.2
ATR0752G071 Amborella trichopoda HOM05D008160 ORTHO05D009635 1.1e-06 57.4 176 30.7
Rhsim04G0053300 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-06 57.0 81 46.9
Thhalv10022045m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 1.9e-06 56.6 88 42.0
BcaB04g20576 Brassica carinata HOM05D010757 ORTHO05D009635 4.2e-06 55.5 147 34.0
ECA240G4605 Erigeron canadensis HOM05D043945 ORTHO05D045223 7.1e-06 54.7 155 32.3
Medtr2g088370 Medicago truncatula HOM05D008160 ORTHO05D009635 9.2e-06 54.3 148 29.1


User provided reference genes

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