Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G311600 Theobroma cacao HOM05D007631 ORTHO05D009566 2.5e-104 382.1 194 100.0
Duzib268G1119 Durio zibethinus HOM05D007631 ORTHO05D009566 1.6e-82 309.7 192 80.7
Gohir.A03G110300 Gossypium hirsutum HOM05D007631 ORTHO05D009566 1.5e-67 260.0 180 72.8
Gorai.005G150800 Gossypium raimondii HOM05D007631 ORTHO05D009566 2.7e-66 255.8 182 71.4
Gohir.D02G134900 Gossypium hirsutum HOM05D007631 ORTHO05D009566 1.5e-64 250.0 180 70.6
COL.COLO4_27670 Corchorus olitorius HOM05D007631 ORTHO05D009566 6.1e-50 201.4 150 72.7
CiPaw.09G164100 Carya illinoinensis HOM05D007631 ORTHO05D009566 1.8e-49 199.9 178 63.5
FvH4_4g07430 Fragaria vesca HOM05D007631 ORTHO05D009566 5.7e-48 194.9 182 61.5
FAN17G2236 Fragaria x ananassa HOM05D007631 ORTHO05D009566 1.4e-46 190.3 180 60.6
RcHm_v2.0_Chr4g0399891 Rosa chinensis HOM05D007631 ORTHO05D009566 1.8e-46 189.9 182 59.9
TWI53G1419 Tripterygium wilfordii HOM05D007631 ORTHO05D009566 1.8e-46 189.9 177 59.9
Prupe.1G077300 Prunus persica HOM05D007631 ORTHO05D009566 1.2e-45 187.2 178 59.0
Manes.04G066700 Manihot esculenta HOM05D007631 ORTHO05D009566 4.6e-45 185.3 177 59.9
QL03p043760 Quercus lobata HOM05D007631 ORTHO05D009566 2.3e-44 183.0 113 75.2
FAN12G2650 Fragaria x ananassa HOM05D007631 ORTHO05D009566 1.9e-43 179.9 173 60.1
Lj3g0001232 Lotus japonicus HOM05D007631 ORTHO05D009566 3.3e-43 179.1 186 54.8
GSVIVG01010153001 Vitis vinifera HOM05D007631 ORTHO05D009566 4.3e-43 178.7 167 55.7
arahy.Tifrunner.gnm1.ann1.C4PR70 Arachis hypogaea HOM05D007631 ORTHO05D009566 1.8e-41 173.3 178 55.1
CsaV3_3G031500 Cucumis sativus L. HOM05D007631 ORTHO05D009566 1.8e-41 173.3 177 56.5
Potri.005G094700 Populus trichocarpa HOM05D007631 ORTHO05D009566 3.1e-41 172.6 177 55.4
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 5.2e-41 171.8 115 70.4
Glyma.11G102300 Glycine max HOM05D007631 ORTHO05D009566 5.2e-41 171.8 179 52.5
Eucgr.J00853 Eucalyptus grandis HOM05D007631 ORTHO05D009566 1.2e-40 170.6 143 60.8
Hma1.2p1_0499F.1_g166830 Hydrangea macrophylla HOM05D007631 ORTHO05D009566 3.4e-40 169.1 187 49.2
FAN07G2143 Fragaria x ananassa HOM05D007631 ORTHO05D009566 1.3e-39 167.2 182 56.0
CsaV3_3G032520 Cucumis sativus L. HOM05D007631 ORTHO05D009566 1.7e-39 166.8 177 53.7
Lalb_Chr03g0024841 Lupinus albus HOM05D007631 ORTHO05D009566 1.1e-38 164.1 177 52.0
Ciclev10032529m.g Citrus clementina HOM05D007631 ORTHO05D009566 3.2e-38 162.5 180 54.4
VMungo1127G1566 Vigna mungo HOM05D007631 ORTHO05D009566 3.2e-38 162.5 185 51.9
PGR119G1778 Punica granatum HOM05D007631 ORTHO05D009566 5.4e-38 161.8 127 63.0
CAN.G157.15 Capsicum annuum HOM05D007631 ORTHO05D009566 7.0e-38 161.4 141 56.7
MELO3C024033.2 Cucumis melo HOM05D007631 ORTHO05D009566 2.7e-37 159.5 210 47.6
MD16G1250700 Malus domestica HOM05D007631 ORTHO05D009566 7.8e-37 157.9 161 51.6
ClCG10G011860 Citrullus lanatus HOM05D007631 ORTHO05D009566 1.3e-36 157.1 125 60.8
CANSAT64G0359 Cannabis sativa HOM05D007631 ORTHO05D009566 3.9e-36 155.6 152 53.3
Hund24286 Selenicereus undatus HOM05D007631 ORTHO05D009566 3.9e-36 155.6 176 48.3
Dinv17601 Davidia involucrata HOM05D007631 ORTHO05D009566 1.5e-35 153.7 142 59.2
Nn4g24939 Nelumbo nucifera HOM05D007631 ORTHO05D009566 1.5e-35 153.7 177 52.5
AUR62015208 Chenopodium quinoa HOM05D007631 ORTHO05D009566 1.9e-35 153.3 177 49.7
HanXRQChr17g0540801 Helianthus annuus HOM05D007631 ORTHO05D009566 1.9e-35 153.3 148 52.7
Lsat_1_v5_gn_3_33601 Lactuca sativa HOM05D007631 ORTHO05D009566 1.9e-35 153.3 152 53.3
Nitab4.5_0002392g0040 Nicotiana tabacum HOM05D007631 ORTHO05D009566 3.3e-35 152.5 172 50.6
ECA246G0740 Erigeron canadensis HOM05D007631 ORTHO05D009566 5.6e-35 151.8 163 49.1
SalBow6G3201 Salvia bowleyana HOM05D007631 ORTHO05D009566 5.6e-35 151.8 173 50.3
EL10Ac9g22926 Beta vulgaris HOM05D007631 ORTHO05D009566 1.6e-34 150.2 177 45.8
Medtr4g074590 Medicago truncatula HOM05D007631 ORTHO05D009566 1.6e-34 150.2 186 50.0
Atru.chr11.1322 Acer truncatum HOM05D007631 ORTHO05D009566 1.4e-33 147.1 114 60.5
PGSC0003DMG400029978 Solanum tuberosum HOM05D007631 ORTHO05D009566 1.4e-33 147.1 145 51.0
Aa31LG8G6570 Aethionema arabicum HOM05D007631 ORTHO05D009566 3.1e-33 146.0 130 56.2
Cc11_g05090 Coffea canephora HOM05D007631 ORTHO05D009566 4.0e-33 145.6 162 48.1
Sopen02g009160 Solanum pennellii HOM05D007631 ORTHO05D009566 6.8e-33 144.8 137 50.4
Psat7g173560 Pisum sativum HOM05D007631 ORTHO05D009566 8.9e-33 144.4 184 48.9
Sp3g17810 Schrenkiella parvula HOM05D007631 ORTHO05D009566 8.9e-33 144.4 114 61.4
TPR.G32328 Trifolium pratense HOM05D007631 ORTHO05D009566 1.5e-32 143.7 185 49.2
A01p34940 Brassica napus HOM05D007631 ORTHO05D009566 2.0e-32 143.3 137 52.6
C01p44350 Brassica napus HOM05D007631 ORTHO05D009566 2.0e-32 143.3 137 52.6
BolC1t04400H Brassica oleracea HOM05D007631 ORTHO05D009566 2.0e-32 143.3 137 52.6
BraA01t03577Z Brassica rapa HOM05D007631 ORTHO05D009566 2.0e-32 143.3 137 52.6
FAN22G0357 Fragaria x ananassa HOM05D007631 ORTHO05D009566 2.6e-32 142.9 148 56.1
Solyc02g055440.4 Solanum lycopersicum HOM05D007631 ORTHO05D009566 2.6e-32 142.9 146 50.0
Thhalv10021444m.g Eutrema salsugineum HOM05D007631 ORTHO05D009566 4.4e-32 142.1 135 54.8
Sc10g0006760 Simmondsia chinensis HOM05D007631 ORTHO05D009566 4.4e-32 142.1 164 45.7
Haze_20362 Corylus avellana HOM05D007631 ORTHO05D009566 2.2e-31 139.8 146 54.8
AL3G33250 Arabidopsis lyrata HOM05D007631 ORTHO05D009566 8.3e-31 137.9 153 50.3
Phvul.011G031300 Phaseolus vulgaris HOM05D007631 ORTHO05D009566 1.1e-30 137.5 156 51.3
AT3G19800 Arabidopsis thaliana HOM05D007631 ORTHO05D009566 3.2e-30 136.0 161 46.6
Carub.0003s1968 Capsella rubella HOM05D007631 ORTHO05D009566 4.1e-30 135.6 159 49.7
PSO017G5087 Papaver somniferum HOM05D007631 ORTHO05D009566 9.2e-30 134.4 144 48.6
Ca_03026_v3 Cicer arietinum L. HOM05D007631 ORTHO05D009566 1.2e-29 134.0 185 47.6
CARHR095310 Cardamine hirsuta HOM05D007631 ORTHO05D009566 1.0e-28 131.0 157 49.0
PSO478G5292 Papaver somniferum HOM05D007631 ORTHO05D009566 2.3e-28 129.8 184 41.8
Aqoxy7G02010 Aquilegia oxysepala HOM05D007631 ORTHO05D009566 4.3e-27 125.6 125 54.4
HPP92_025628 Vanilla planifolia HOM05D007631 ORTHO05D009566 2.8e-26 122.9 136 47.1
Atru.BG.289.p Acer truncatum HOM05D007631 ORTHO05D009566 6.2e-26 121.7 91 60.4
unitig_699.g19551 Utricularia gibba HOM05D007631 ORTHO05D009566 1.1e-25 120.9 161 41.6
vmacro10901 Vaccinium macrocarpon HOM05D007631 ORTHO05D009566 1.2e-24 117.5 167 43.1
Cfa019889 Carpinus fangiana HOM05D007631 ORTHO05D009566 1.5e-24 117.1 78 70.5
MBI06_g36505_MAGBIO Magnolia biondii HOM05D007631 ORTHO05D009566 1.5e-24 117.1 98 58.2
TAR622G1133 Trochodendron aralioides HOM05D007631 ORTHO05D009566 7.6e-24 114.8 89 59.6
Os04g0525000 Oryza sativa ssp. japonica HOM05D007631 ORTHO05D009566 1.4e-22 110.5 123 43.1
DCAR_030399 Daucus carota HOM05D007631 ORTHO05D009566 7.1e-22 108.2 149 47.0
ATR0618G124 Amborella trichopoda HOM05D007631 ORTHO05D009566 2.7e-21 106.3 69 69.6
Migut.E00703 Erythranthe guttata HOM05D007631 ORTHO05D009566 1.3e-20 104.0 122 46.7
Migut.E00614 Erythranthe guttata HOM05D007631 ORTHO05D009566 1.7e-20 103.6 129 45.7
Zm00001eb076870 Zea mays HOM05D007631 ORTHO05D009566 1.1e-19 100.9 115 45.2
Sed0008358 Sechium edule HOM05D007631 ORTHO05D009566 1.1e-17 94.4 179 40.8
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 1.1e-14 84.3 167 34.7
Oeu033537.1 Olea europaea HOM05D007631 ORTHO05D009566 1.1e-14 84.3 81 49.4
arahy.Tifrunner.gnm1.ann1.GZ47R7 Arachis hypogaea HOM05D007631 ORTHO05D009566 2.4e-14 83.2 120 47.5
Nitab4.5_0000139g0130 Nicotiana tabacum HOM05D007631 ORTHO05D009566 5.1e-12 75.5 72 55.6
SGA_v2.0_scaffold88G27234 Striga asiatica HOM05D007631 ORTHO05D009566 4.3e-11 72.4 124 41.9
SGA_v2.0_scaffold88G27232 Striga asiatica HOM05D007631 ORTHO05D009566 2.1e-10 70.1 63 49.2
arahy.Tifrunner.gnm1.ann1.1HI7LS Arachis hypogaea HOM05D037061 ORTHO05D009566 9.3e-06 54.7 44 56.8
arahy.Tifrunner.gnm1.ann1.3PEX26 Arachis hypogaea HOM05D037061 ORTHO05D009566 9.3e-06 54.7 44 56.8


User provided reference genes

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