Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G311400 Theobroma cacao HOM05D002570 ORTHO05D002689 5.2e-33 143.7 67 100.0
Duzib251G0386 Durio zibethinus HOM05D002570 ORTHO05D002689 9.6e-19 96.3 66 72.7
Gohir.D12G159000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 4.8e-18 94.0 65 69.2
Gorai.008G172100 Gossypium raimondii HOM05D002570 ORTHO05D002689 3.1e-17 91.3 65 67.7
Gohir.A12G155900 Gossypium hirsutum HOM05D002570 ORTHO05D002689 4.0e-17 90.9 65 66.2
Potri.006G070200 Populus trichocarpa HOM05D002570 ORTHO05D002689 3.8e-15 84.3 62 62.9
Sabra06G0052300 Salix brachista HOM05D002570 ORTHO05D002689 3.8e-15 84.3 62 62.9
Ciclev10010203m.g Citrus clementina HOM05D002570 ORTHO05D002689 8.7e-12 73.2 66 59.1
Glyma.17G055600 Glycine max HOM05D002570 ORTHO05D002689 4.3e-11 70.9 72 50.0
Lj4g0013925 Lotus japonicus HOM05D002570 ORTHO05D002689 1.3e-10 69.3 74 48.6
Dinv25488 Davidia involucrata HOM05D002570 ORTHO05D002689 1.6e-10 68.9 66 51.5
Lalb_Chr12g0199761 Lupinus albus HOM05D002570 ORTHO05D002689 1.4e-09 65.9 73 49.3
VMungo1215G3302 Vigna mungo HOM05D002570 ORTHO05D002689 1.4e-09 65.9 72 47.2
Phvul.003G137400 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 1.8e-09 65.5 72 45.8
Potri.018G131900 Populus trichocarpa HOM05D002570 ORTHO05D002689 3.1e-09 64.7 57 56.1
arahy.Tifrunner.gnm1.ann1.G00P8D Arachis hypogaea HOM05D002570 ORTHO05D002689 1.2e-08 62.8 64 48.4
FAN22G1225 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.2e-08 62.8 61 52.5
Cfa013397 Carpinus fangiana HOM05D002570 ORTHO05D002689 1.5e-08 62.4 63 52.4
Glyma.13G371800 Glycine max HOM05D002570 ORTHO05D002689 1.5e-08 62.4 67 47.8
FvH4_4g06680 Fragaria vesca HOM05D030384 ORTHO05D002689 2.6e-08 61.6 59 52.5
FAN12G3444 Fragaria x ananassa HOM05D030384 ORTHO05D002689 2.6e-08 61.6 59 52.5
arahy.Tifrunner.gnm1.ann1.ANT7GU Arachis hypogaea HOM05D002570 ORTHO05D002689 3.4e-08 61.2 64 48.4
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 3.4e-08 61.2 77 48.1
TPR.G27566 Trifolium pratense HOM05D002570 ORTHO05D002689 3.4e-08 61.2 68 45.6
TWI60G0727 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 5.8e-08 60.5 68 45.6
Glyma.13G103400 Glycine max HOM05D002570 ORTHO05D002689 7.6e-08 60.1 70 40.0
Psat4g014680 Pisum sativum HOM05D002570 ORTHO05D002689 1.7e-07 58.9 71 46.5
Prupe.1G069600 Prunus persica HOM05D002570 ORTHO05D002689 1.7e-07 58.9 59 50.8
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 3.8e-07 57.8 70 45.7
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 4.9e-07 57.4 70 44.3
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 4.9e-07 57.4 68 45.6
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 4.9e-07 57.4 70 45.7
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 6.5e-07 57.0 70 44.3
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 6.5e-07 57.0 70 45.7
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 8.4e-07 56.6 70 44.3
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 8.4e-07 56.6 70 44.3
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 8.4e-07 56.6 70 45.7
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 8.4e-07 56.6 70 42.9
Solyc06g068620.3 Solanum lycopersicum HOM05D002570 ORTHO05D002689 8.4e-07 56.6 65 46.2
Sopen06g025880 Solanum pennellii HOM05D002570 ORTHO05D002689 8.4e-07 56.6 65 46.2
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.1e-06 56.2 70 42.9
unitig_27.g24959 Utricularia gibba HOM05D002570 ORTHO05D002689 1.1e-06 56.2 67 43.3
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 1.4e-06 55.8 68 44.1
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.4e-06 55.8 68 44.1
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.4e-06 55.8 68 44.1
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.4e-06 55.8 68 44.1
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.4e-06 55.8 68 44.1
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 1.4e-06 55.8 68 44.1
CAN.G1089.3 Capsicum annuum HOM05D002570 ORTHO05D002689 1.9e-06 55.5 65 46.2
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.9e-06 55.5 70 42.9
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 1.9e-06 55.5 67 44.8
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 1.9e-06 55.5 57 47.4
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 1.9e-06 55.5 70 44.3
Sabra03G0137200 Salix brachista HOM05D002570 ORTHO05D002689 1.9e-06 55.5 60 45.0
unitig_22.g6281 Utricularia gibba HOM05D002570 ORTHO05D002689 1.9e-06 55.5 67 43.3
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 2.5e-06 55.1 70 44.3
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 2.5e-06 55.1 70 42.9
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 2.5e-06 55.1 68 44.1
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 2.5e-06 55.1 68 44.1
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 3.2e-06 54.7 60 46.7
Oeu036442.1 Olea europaea HOM05D002570 ORTHO05D002689 3.2e-06 54.7 59 42.4
unitig_8.g3045 Utricularia gibba HOM05D002570 ORTHO05D002689 3.2e-06 54.7 59 47.5
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 4.2e-06 54.3 70 40.0
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 4.2e-06 54.3 70 40.0
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 4.2e-06 54.3 70 41.4
FAN17G2389 Fragaria x ananassa HOM05D030384 ORTHO05D002689 4.2e-06 54.3 37 62.2
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 4.2e-06 54.3 70 44.3
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 4.2e-06 54.3 70 44.3
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 4.2e-06 54.3 70 44.3
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 4.2e-06 54.3 64 45.3
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 4.2e-06 54.3 64 45.3
PGSC0003DMG400028926 Solanum tuberosum HOM05D002570 ORTHO05D002689 4.2e-06 54.3 57 45.6
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 4.2e-06 54.3 60 43.3
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 5.5e-06 53.9 70 41.4
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 5.5e-06 53.9 68 42.6
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 5.5e-06 53.9 64 45.3
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 5.5e-06 53.9 64 45.3
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 5.5e-06 53.9 70 42.9
Atru.chr1.2751 Acer truncatum HOM05D002570 ORTHO05D002689 7.1e-06 53.5 70 41.4
Glyma.15G001900 Glycine max HOM05D002570 ORTHO05D002689 7.1e-06 53.5 57 47.4
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 7.1e-06 53.5 57 45.6
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 7.1e-06 53.5 60 41.7
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 9.3e-06 53.1 67 41.8
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 9.3e-06 53.1 70 41.4
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 9.3e-06 53.1 70 41.4
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 9.3e-06 53.1 70 41.4


User provided reference genes

Program Settings