Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 6.4e-91 337.4 173 100.0
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 3.0e-80 302.0 173 87.9
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 5.6e-79 297.7 171 88.3
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 3.8e-67 258.5 172 75.6
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 9.3e-66 253.8 144 88.9
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 2.5e-63 245.7 167 72.5
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 7.4e-63 244.2 171 67.8
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 9.6e-63 243.8 170 67.6
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 9.6e-63 243.8 169 71.6
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 9.6e-63 243.8 170 70.0
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 2.1e-62 242.7 168 70.2
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 4.8e-62 241.5 156 75.6
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.1e-61 240.4 171 66.1
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.4e-61 240.0 168 70.2
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 9.0e-61 237.3 168 68.5
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.2e-60 236.9 172 66.3
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 2.0e-60 236.1 173 66.5
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 2.6e-60 235.7 170 67.1
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 2.6e-60 235.7 171 64.3
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 3.4e-60 235.3 171 69.0
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 3.4e-60 235.3 173 66.5
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 1.7e-59 233.0 172 72.1
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 2.2e-59 232.6 169 66.9
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 3.8e-59 231.9 173 66.5
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 8.4e-59 230.7 171 67.3
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 1.9e-58 229.6 170 67.1
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 2.5e-58 229.2 171 66.1
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 2.5e-58 229.2 171 66.1
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 7.1e-58 227.6 160 70.6
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 7.1e-58 227.6 167 65.9
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 9.3e-58 227.3 167 65.9
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.7e-57 225.7 173 65.9
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.7e-57 225.7 173 65.9
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 3.5e-57 225.3 172 65.1
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 6.0e-57 224.6 144 77.8
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 7.9e-57 224.2 170 66.5
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 3.0e-56 222.2 142 76.8
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 3.9e-56 221.9 177 62.1
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 5.1e-56 221.5 167 65.3
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 5.7e-55 218.0 171 64.3
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 7.4e-55 217.6 167 64.1
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 9.6e-55 217.2 170 64.7
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 1.6e-54 216.5 154 69.5
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 2.1e-54 216.1 171 63.7
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.0e-52 209.5 195 56.9
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 4.5e-52 208.4 169 60.4
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 7.6e-52 207.6 169 60.9
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 1.7e-51 206.5 167 59.3
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 2.2e-51 206.1 168 61.9
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 2.2e-51 206.1 144 71.5
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 2.9e-51 205.7 169 60.9
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 5.0e-51 204.9 167 64.7
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 6.5e-51 204.5 169 60.9
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 5.5e-50 201.4 170 60.0
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 9.3e-50 200.7 168 61.3
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 4.6e-49 198.4 170 58.8
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 3.0e-48 195.7 146 67.8
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 1.5e-47 193.4 122 78.7
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 7.4e-47 191.0 165 60.0
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 9.7e-47 190.7 148 64.2
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 2.2e-46 189.5 167 59.3
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 2.8e-46 189.1 173 59.5
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 6.9e-45 184.5 122 76.2
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 5.9e-44 181.4 158 62.0
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 1.0e-43 180.6 144 56.2
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 2.9e-43 179.1 114 77.2
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 5.0e-43 178.3 163 57.1
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.6e-41 173.3 120 72.5
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.6e-41 173.3 120 72.5
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 2.1e-41 172.9 128 68.8
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 5.7e-39 164.9 124 64.5
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 9.7e-39 164.1 126 68.3
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 4.8e-38 161.8 171 55.0
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 4.1e-37 158.7 171 54.4
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 1.0e-35 154.1 109 67.0
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 7.2e-34 147.9 131 62.6
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 1.2e-33 147.1 142 57.7
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.7e-33 146.0 106 67.0
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.7e-33 146.0 106 67.0
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 2.0e-31 139.8 115 59.1
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 3.3e-31 139.0 144 51.4
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 5.7e-31 138.3 129 56.6
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 3.1e-29 132.5 131 54.2
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.5e-28 128.6 129 53.5
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 1.6e-25 120.2 71 81.7
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.4e-24 117.1 92 62.0
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 8.8e-24 114.4 82 73.2
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 6.3e-22 108.2 80 65.0
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 4.1e-21 105.5 103 52.4
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 3.5e-20 102.4 77 67.5
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 8.5e-19 97.8 126 35.7
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.7e-17 92.0 58 75.9
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 5.2e-16 88.6 64 68.8
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.5e-15 87.0 101 46.5
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 3.4e-15 85.9 165 27.9
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 4.4e-15 85.5 52 80.8
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 1.3e-14 84.0 52 78.8
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.7e-14 83.6 90 48.9
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 3.7e-14 82.4 59 66.1
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 4.1e-13 79.0 57 64.9
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 4.5e-12 75.5 65 56.9
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 5.2e-08 62.0 80 40.0
MD17G1182100 Malus domestica HOM05D007520 ORTHO05D009417 2.2e-06 56.6 49 57.1


User provided reference genes

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