Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G302600 Theobroma cacao HOM05D000590 ORTHO05D005739 2.8e-100 368.6 185 100.0
Thecc.07G194000 Theobroma cacao HOM05D000590 ORTHO05D005739 1.5e-74 283.1 185 78.9
Thecc.04G180700 Theobroma cacao HOM05D000590 ORTHO05D005739 2.4e-64 249.2 184 74.5
Gohir.A10G136500 Gossypium hirsutum HOM05D000590 ORTHO05D005739 1.9e-56 223.0 185 68.1
Gorai.011G144000 Gossypium raimondii HOM05D000590 ORTHO05D005739 6.0e-55 218.0 185 68.1
Gohir.D10G130300 Gossypium hirsutum HOM05D000590 ORTHO05D005739 3.8e-49 198.7 181 65.7
COL.COLO4_10182 Corchorus olitorius HOM05D002786 ORTHO05D003493 9.1e-35 151.0 150 56.0
Haze_11082 Corylus avellana HOM05D000590 ORTHO05D005739 2.5e-24 116.3 186 45.2
Cfa008549 Carpinus fangiana HOM05D000590 ORTHO05D005739 4.2e-24 115.5 186 44.6
CiPaw.01G108600 Carya illinoinensis HOM05D000590 ORTHO05D005739 1.2e-23 114.0 191 44.0
Potri.014G146300 Populus trichocarpa HOM05D000590 ORTHO05D005739 2.1e-23 113.2 186 43.0
Manes.04G059300 Manihot esculenta HOM05D000590 ORTHO05D005739 4.0e-22 109.0 199 42.2
Sabra02G0177600 Salix brachista HOM05D000590 ORTHO05D005739 6.7e-22 108.2 183 45.4
Potri.002G232800 Populus trichocarpa HOM05D000590 ORTHO05D005739 8.8e-22 107.8 186 43.5
MD04G1028600 Malus domestica HOM05D000590 ORTHO05D005739 2.0e-21 106.7 199 38.7
MD13G1278800 Malus domestica HOM05D000590 ORTHO05D005739 3.3e-21 105.9 183 41.0
Dinv22651 Davidia involucrata HOM05D000590 ORTHO05D005739 9.7e-21 104.4 201 41.3
Dinv44239 Davidia involucrata HOM05D000590 ORTHO05D005739 1.7e-20 103.6 201 39.3
Cpa.g.sc50.132 Carica papaya HOM05D000590 ORTHO05D005739 2.2e-20 103.2 222 40.5
Prupe.1G177800 Prunus persica HOM05D000590 ORTHO05D005739 4.1e-19 99.0 198 38.4
ClCG08G003700 Citrullus lanatus HOM05D000590 ORTHO05D005739 4.5e-18 95.5 199 37.7
QL10p044299 Quercus lobata HOM05D000590 ORTHO05D005739 1.7e-17 93.6 187 40.6
Atru.chr3.1727 Acer truncatum HOM05D000590 ORTHO05D005739 5.0e-17 92.0 173 39.9
CsaV3_6G003090 Cucumis sativus L. HOM05D000590 ORTHO05D005739 1.5e-16 90.5 199 36.7
MELO3C026117.2 Cucumis melo HOM05D000590 ORTHO05D005739 5.5e-16 88.6 199 38.2
TAR362G0932 Trochodendron aralioides HOM05D000590 ORTHO05D005739 5.5e-16 88.6 213 33.8
Ciclev10018602m.g Citrus clementina HOM05D000590 ORTHO05D005739 7.2e-16 88.2 206 38.8
RcHm_v2.0_Chr4g0409981 Rosa chinensis HOM05D000590 ORTHO05D005739 8.8e-14 81.3 205 34.6
Sed0026193 Sechium edule HOM05D000590 ORTHO05D005739 8.8e-14 81.3 173 35.3
THA.LOC104800910 Tarenaya hassleriana HOM05D000590 ORTHO05D005739 2.0e-13 80.1 197 38.1
FAN07G2789 Fragaria x ananassa HOM05D000590 ORTHO05D005739 7.5e-13 78.2 189 39.2
Aa31LG1G8510 Aethionema arabicum HOM05D000590 ORTHO05D005739 1.3e-12 77.4 199 36.2
Hma1.2p1_0412F.1_g147170 Hydrangea macrophylla HOM05D000590 ORTHO05D005739 2.8e-12 76.3 210 31.9
EL10Ac5g11624 Beta vulgaris HOM05D000590 ORTHO05D005739 2.4e-11 73.2 178 37.1
Sed0020632 Sechium edule HOM05D000590 ORTHO05D005739 2.4e-11 73.2 229 31.0
Phvul.008G018500 Phaseolus vulgaris HOM05D000590 ORTHO05D005739 7.0e-11 71.6 202 33.2
Ah.12g062200 Amaranthus hybridus HOM05D000590 ORTHO05D005739 9.1e-11 71.2 188 34.6
TWI63G0312 Tripterygium wilfordii HOM05D000590 ORTHO05D005739 1.2e-10 70.9 174 33.9
FAN17G1987 Fragaria x ananassa HOM05D000590 ORTHO05D005739 1.6e-10 70.5 192 35.9
FAN22G1397 Fragaria x ananassa HOM05D000590 ORTHO05D005739 4.5e-10 68.9 192 35.9
Sc07g0007210 Simmondsia chinensis HOM05D000590 ORTHO05D005739 5.9e-10 68.6 193 34.7
Hund15143 Selenicereus undatus HOM05D000590 ORTHO05D005739 1.7e-09 67.0 203 33.0
Thhalv10006646m.g Eutrema salsugineum HOM05D000590 ORTHO05D005739 2.9e-09 66.2 172 33.1
SHI33758 Sapria himalayana HOM05D000590 ORTHO05D005739 5.0e-09 65.5 185 31.9
Psat3g189880 Pisum sativum HOM05D000590 ORTHO05D005739 1.1e-08 64.3 225 32.9
CSS0029067 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D005739 2.5e-08 63.2 190 35.3
Glyma.18G282700 Glycine max HOM05D000590 ORTHO05D005739 2.5e-08 63.2 182 33.0
Carub.0001s0518 Capsella rubella HOM05D000590 ORTHO05D005739 9.5e-08 61.2 197 35.0
CARHR005360 Cardamine hirsuta HOM05D000590 ORTHO05D005739 9.5e-08 61.2 195 34.4
ATR0824G108 Amborella trichopoda HOM05D000590 ORTHO05D005739 1.2e-07 60.8 141 35.5
GSVIVG01013555001 Vitis vinifera HOM05D000590 ORTHO05D005739 1.2e-07 60.8 193 30.1
Lalb_Chr04g0258071 Lupinus albus HOM05D000590 ORTHO05D005739 1.6e-07 60.5 192 34.9
Hund10609 Selenicereus undatus HOM05D000590 ORTHO05D005739 1.6e-07 60.5 196 32.1
CDE06G2342 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 4.0e-06 55.8 189 29.6
VMungo1383G1517 Vigna mungo HOM05D000590 ORTHO05D005739 6.8e-06 55.1 197 31.5
Aqoxy2G04044 Aquilegia oxysepala HOM05D000590 ORTHO05D005739 8.8e-06 54.7 197 34.5


User provided reference genes

Program Settings