Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 3.5e-52 208.0 103 100.0
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 3.5e-52 208.0 103 100.0
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 8.6e-51 203.4 103 97.1
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.1e-50 203.0 103 97.1
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.5e-50 201.8 103 97.1
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.5e-50 201.8 103 97.1
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 5.6e-50 200.7 103 96.1
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.2e-49 199.5 103 96.1
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 8.0e-49 196.8 103 94.2
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.5e-47 192.6 103 93.2
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 3.7e-46 188.0 103 93.2
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 9.2e-45 183.3 104 90.4
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 2.7e-44 181.8 103 88.3
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 3.5e-44 181.4 102 87.3
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 3.5e-44 181.4 103 87.4
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 7.8e-44 180.3 103 88.3
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 7.8e-44 180.3 103 86.4
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 1.0e-43 179.9 103 85.4
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 2.3e-43 178.7 103 87.4
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 2.3e-43 178.7 103 87.4
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 8.6e-43 176.8 103 86.4
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 1.1e-42 176.4 103 87.4
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 1.5e-42 176.0 103 87.4
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 1.5e-42 176.0 103 85.4
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 85.4
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 85.4
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 85.4
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 1.9e-42 175.6 103 86.4
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 2.5e-42 175.3 103 87.4
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 4.3e-42 174.5 103 87.4
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 5.6e-42 174.1 104 84.6
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 7.3e-42 173.7 103 85.4
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 84.5
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 83.5
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 84.5
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 84.5
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 84.5
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 83.5
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 84.5
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 85.4
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 84.5
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 1.2e-41 172.9 103 84.5
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 1.6e-41 172.6 102 83.3
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 1.6e-41 172.6 103 85.4
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 2.1e-41 172.2 104 84.6
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 2.1e-41 172.2 102 85.3
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-41 171.8 103 84.5
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-41 171.8 103 84.5
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 2.8e-41 171.8 102 86.3
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 2.8e-41 171.8 102 86.3
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 3.6e-41 171.4 104 81.7
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 4.7e-41 171.0 103 82.5
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 6.2e-41 170.6 103 83.5
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 6.2e-41 170.6 105 84.8
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 8.0e-41 170.2 103 82.5
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 8.0e-41 170.2 103 80.6
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 8.0e-41 170.2 104 80.8
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 1.8e-40 169.1 103 79.6
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 1.8e-40 169.1 103 85.4
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 3.1e-40 168.3 102 83.3
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 3.1e-40 168.3 103 81.6
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 4.0e-40 167.9 103 82.5
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 4.0e-40 167.9 103 81.6
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 4.0e-40 167.9 106 83.0
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 4.0e-40 167.9 103 80.6
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 4.0e-40 167.9 103 80.6
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 5.2e-40 167.5 102 83.3
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 5.2e-40 167.5 103 84.5
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 5.2e-40 167.5 105 81.9
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 6.8e-40 167.2 103 81.6
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 1.2e-39 166.4 107 80.4
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.2e-39 166.4 105 81.0
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 1.2e-39 166.4 107 82.2
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 2.0e-39 165.6 105 81.0
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 2.0e-39 165.6 103 81.6
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 2.6e-39 165.2 106 80.2
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 4.4e-39 164.5 103 83.5
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 4.4e-39 164.5 103 81.6
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 5.8e-39 164.1 100 78.0
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 5.8e-39 164.1 103 81.6
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 7.5e-39 163.7 102 79.4
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 7.5e-39 163.7 102 79.4
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 1.3e-38 162.9 104 82.7
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 1.7e-38 162.5 103 79.6
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 2.2e-38 162.2 103 78.6
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 2.2e-38 162.2 103 79.6
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 2.9e-38 161.8 103 79.6
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 3.7e-38 161.4 101 80.2
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 3.7e-38 161.4 99 83.8
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 4.9e-38 161.0 103 81.6
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 8.3e-38 160.2 103 78.6
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 1.9e-37 159.1 98 78.6
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 1.9e-37 159.1 103 79.6
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.9e-37 159.1 103 79.6
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 2.4e-37 158.7 103 78.6
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 3.2e-37 158.3 104 78.8
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 5.4e-37 157.5 106 76.4
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 5.4e-37 157.5 106 76.4
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 5.4e-37 157.5 103 78.6
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 9.2e-37 156.8 106 76.4
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 9.2e-37 156.8 106 76.4
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.6e-36 156.0 106 75.5
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 3.5e-36 154.8 104 77.9
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 4.6e-36 154.5 94 84.0
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 7.8e-36 153.7 90 85.6
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.0e-35 153.3 94 81.9
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 2.3e-35 152.1 103 75.7
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 3.9e-35 151.4 93 80.6
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 3.9e-35 151.4 93 80.6
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 3.9e-35 151.4 82 87.8
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 5.1e-35 151.0 103 74.8
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 5.1e-35 151.0 106 76.4
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 8.6e-35 150.2 94 80.9
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 4.3e-34 147.9 98 75.5
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 4.0e-32 141.4 97 73.2
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 6.8e-32 140.6 97 75.3
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 3.4e-31 138.3 73 90.4
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 4.9e-30 134.4 73 86.3
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 2.4e-29 132.1 85 75.3
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 2.4e-29 132.1 69 89.9
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 3.2e-29 131.7 98 68.4
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 9.5e-26 120.2 86 70.9
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.8e-25 118.6 103 65.0
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 2.2e-22 109.0 79 64.6
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 5.4e-21 104.4 73 64.4
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 2.1e-20 102.4 74 62.2
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 3.0e-19 98.6 64 67.2
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 3.0e-19 98.6 68 73.5
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 3.0e-19 98.6 68 73.5
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 3.0e-19 98.6 57 82.5
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 7.3e-18 94.0 54 81.5
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 3.4e-15 85.1 70 52.9
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 4.4e-15 84.7 65 55.4
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 1.3e-14 83.2 104 53.8
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 1.7e-14 82.8 55 61.8
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 2.0e-07 59.3 67 44.8
AagrBONN_evm.TU.Sc2ySwM_117.2363 Anthoceros agrestis HOM05D005547 ORTHO05D006887 2.9e-06 55.5 29 79.3


User provided reference genes

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