Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 1.1e-235 819.7 450 100.0
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 1.0e-212 743.4 448 90.4
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.1e-206 723.4 450 88.4
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.8e-206 722.6 450 88.0
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 2.7e-205 718.8 450 88.0
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 1.6e-181 639.8 458 72.3
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 2.8e-178 629.0 457 73.7
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 3.6e-178 628.6 461 73.1
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 5.0e-172 608.2 457 72.6
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 4.7e-170 601.7 455 72.7
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 2.4e-166 589.3 458 70.3
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 3.5e-165 585.5 458 70.7
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 2.3e-164 582.8 455 70.8
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 5.1e-164 581.6 441 68.9
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 6.6e-164 581.3 465 65.8
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 7.3e-163 577.8 458 69.2
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 6.2e-162 574.7 398 79.1
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.7e-159 566.6 468 67.5
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 1.1e-158 563.9 457 66.1
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 5.4e-158 561.6 458 70.1
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 3.5e-157 558.9 478 64.6
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 7.8e-157 557.8 458 68.1
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 1.9e-155 553.1 421 69.4
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 2.5e-155 552.7 458 65.9
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 2.8e-154 549.3 454 65.0
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 2.8e-154 549.3 454 65.0
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 2.6e-152 542.7 462 66.9
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 2.2e-151 539.7 470 61.9
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 2.4e-150 536.2 454 66.7
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 1.6e-149 533.5 521 56.6
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 3.5e-149 532.3 463 67.0
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 1.5e-147 526.9 434 66.4
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 4.8e-146 521.9 458 61.8
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 9.0e-145 517.7 454 63.2
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.2e-144 517.3 471 63.1
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 2.6e-144 516.2 445 62.9
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.5e-144 515.4 472 62.7
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 8.4e-143 511.1 471 61.8
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 1.1e-142 510.8 457 63.0
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 2.1e-141 506.5 461 62.0
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 6.0e-141 505.0 455 62.4
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 6.0e-141 505.0 461 61.8
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 1.3e-140 503.8 460 61.5
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 1.8e-140 503.4 461 62.0
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 2.3e-140 503.1 465 64.5
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 2.3e-140 503.1 400 66.8
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 7.4e-139 498.0 465 61.9
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 1.6e-138 496.9 468 63.5
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 4.8e-138 495.4 459 59.7
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 9.0e-137 491.1 453 62.3
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 2.0e-136 490.0 456 59.6
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 3.4e-136 489.2 461 59.4
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 3.4e-136 489.2 482 56.4
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 7.6e-136 488.0 457 59.1
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 1.3e-135 487.3 465 62.2
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 1.3e-135 487.3 458 60.9
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 3.8e-135 485.7 462 61.3
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 8.4e-135 484.6 461 60.3
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 1.9e-134 483.4 393 65.9
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 1.9e-134 483.4 458 59.4
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 1.8e-132 476.9 457 59.1
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 1.4e-129 467.2 463 61.8
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 2.4e-129 466.5 465 59.1
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 4.0e-129 465.7 463 61.8
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 1.7e-127 460.3 465 59.1
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 4.9e-127 458.8 463 59.6
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 1.1e-126 457.6 323 72.8
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 2.5e-126 456.4 388 64.9
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 2.5e-126 456.4 463 59.0
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 2.5e-126 456.4 467 59.3
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 2.5e-126 456.4 456 56.6
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 1.6e-125 453.8 461 58.8
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 3.5e-125 452.6 461 58.6
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 1.9e-123 446.8 314 72.3
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 2.5e-123 446.4 459 57.5
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 5.7e-123 445.3 341 67.7
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 1.4e-118 430.6 455 54.5
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.4e-116 424.1 254 83.9
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 8.8e-116 421.4 397 57.7
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 2.5e-115 419.9 444 52.3
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 3.3e-115 419.5 455 56.3
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 4.3e-115 419.1 453 53.9
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 3.7e-114 416.0 345 63.2
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 8.5e-111 404.8 416 55.0
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.4e-110 404.1 347 63.7
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 7.2e-110 401.7 377 59.4
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 5.1e-108 395.6 413 53.0
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 9.7e-107 391.3 398 55.3
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 8.2e-106 388.3 348 59.8
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 1.5e-104 384.0 465 49.0
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 8.8e-100 368.2 436 51.6
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 2.6e-99 366.7 391 54.2
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 2.6e-96 356.7 429 54.1
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 1.5e-86 324.3 298 56.7
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 1.0e-84 318.2 476 43.5
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 4.8e-82 309.3 275 59.6
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 5.9e-80 302.4 482 42.7
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 3.8e-79 299.7 480 42.1
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.7e-74 284.3 181 76.8
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 6.3e-74 282.3 461 38.8
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 8.3e-66 255.4 391 47.3
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 9.8e-59 231.9 322 42.2
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 1.7e-58 231.1 218 58.7
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 1.1e-54 218.4 357 40.1
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 4.1e-49 199.9 176 63.6
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 8.1e-37 159.1 150 50.0
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 5.1e-31 139.8 184 46.7
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 3.4e-27 127.1 221 40.3
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 5.7e-14 83.2 63 68.3
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 1.1e-12 79.0 84 47.6
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 3.1e-12 77.4 42 83.3
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 8.7e-07 59.3 104 37.5


User provided reference genes

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