Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 2224.1 1120 100.0
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1996.9 1124 89.5
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1843.2 1124 83.0
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1840.9 1124 83.1
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1835.5 1124 82.9
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1815.0 1118 82.3
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1546.9 1124 70.1
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1532.7 1116 69.4
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1522.7 1129 68.8
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1506.9 1144 67.6
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1500.0 1125 66.5
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1496.9 1125 67.8
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1484.5 1128 67.2
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1448.0 1145 65.9
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1445.3 1139 65.9
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1437.6 1130 64.1
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1436.8 1137 65.2
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1436.0 1120 65.2
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1435.6 1123 65.0
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1434.9 1123 65.0
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1432.2 1125 64.8
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1431.4 1138 65.7
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1426.0 1123 64.5
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1422.1 1120 64.7
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1421.0 1120 64.7
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1417.1 1120 64.6
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1412.5 1159 63.7
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1393.6 1143 63.3
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1367.4 1139 62.2
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1349.0 1137 61.1
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1343.6 1131 61.5
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1342.8 1134 61.1
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1340.9 1137 62.4
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1333.9 1123 60.9
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1333.5 1137 61.8
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1332.8 1140 61.8
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1329.3 1148 60.1
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1321.2 1125 61.5
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1320.8 1141 59.5
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1320.8 1141 59.9
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1313.5 1173 59.3
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1313.1 1130 60.7
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1311.2 1136 61.4
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1303.5 1123 61.7
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1294.3 1129 61.0
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1293.5 1124 60.1
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1282.3 1131 59.9
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1276.5 1126 60.7
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1273.8 1134 59.2
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1273.8 1139 58.9
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1265.0 1133 59.8
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1264.6 1140 58.3
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1264.2 1136 58.7
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1264.2 1146 57.2
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1258.4 1089 60.3
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1256.1 1138 57.6
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1250.0 1131 58.5
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1244.2 1125 58.8
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1242.6 1080 58.9
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1241.5 1145 56.2
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1237.2 1133 56.2
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1237.2 1142 56.0
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1231.9 1139 56.0
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1231.1 1137 57.2
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1229.2 1144 56.0
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1229.2 1132 58.0
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1219.1 1132 56.6
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1216.8 1136 55.6
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1210.7 1130 57.3
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1206.8 1128 56.4
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1206.4 1128 56.4
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1204.9 1145 56.7
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1202.6 1148 54.7
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1201.0 1016 60.7
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1198.7 1128 56.1
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1198.3 1128 56.1
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1194.9 1148 56.3
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1188.3 1146 56.3
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1168.7 1149 54.5
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1159.8 1138 54.1
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 1157.9 1144 55.1
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1142.1 1128 53.9
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1140.2 1135 53.3
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 0.0e+00 1116.3 1031 56.7
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 0.0e+00 1097.8 1176 51.1
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 0.0e+00 1085.5 1163 50.7
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 8.4e-309 1063.9 1105 52.7
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 8.1e-304 1047.3 1130 50.3
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 4.9e-301 1038.1 1122 51.3
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 3.4e-294 1015.4 1149 49.5
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 1.9e-284 983.0 901 58.5
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 1.2e-270 937.2 762 60.9
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 1.2e-267 927.2 640 71.4
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.6e-267 925.6 657 70.2
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 6.7e-266 921.4 1138 46.4
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 8.2e-256 887.9 1122 44.7
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 4.7e-243 845.5 642 66.4
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 2.8e-232 809.7 644 61.8
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 1.1e-220 771.2 644 61.3
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 2.8e-219 766.5 561 68.3
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 5.8e-217 758.8 1209 38.6
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 7.0e-215 751.9 1157 40.6
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 3.5e-214 749.6 611 65.0
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 3.6e-211 739.6 1239 37.3
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 1.9e-191 674.1 561 61.7
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 4.0e-178 629.8 640 52.2
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 3.0e-173 613.6 463 66.5
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 3.3e-172 610.1 710 47.7
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 3.3e-164 583.6 512 58.6
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 4.3e-164 583.2 485 62.9
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 1.2e-153 548.5 478 61.7
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 2.8e-86 324.7 1594 24.4
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 9.6e-79 299.7 514 36.4
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 9.6e-79 299.7 745 34.4
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 6.6e-72 276.9 604 32.9
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 4.3e-71 274.2 547 34.2
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 9.6e-71 273.1 249 54.6
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 2.4e-66 258.5 483 34.8
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 8.4e-59 233.4 380 40.5
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 5.5e-58 230.7 581 29.9
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 7.9e-49 200.3 517 30.0
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 9.7e-47 193.4 229 46.7
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-41 176.4 176 50.6
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-40 172.2 148 59.5
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-40 172.2 148 59.5
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-36 158.7 251 38.2
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-36 158.7 373 32.2
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 8.5e-35 153.7 238 37.8
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 4.7e-33 147.9 150 51.3
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-32 145.6 148 50.7
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-28 132.1 218 37.6
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-26 125.9 94 58.5
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 3.2e-26 125.2 121 53.7
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 6.7e-24 117.5 79 73.4
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 4.5e-20 104.8 139 46.8
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-18 99.4 240 28.3
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 4.2e-18 98.2 123 40.7
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 1.0e-16 93.6 55 81.8
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 8.8e-16 90.5 206 32.0
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 8.8e-16 90.5 206 32.0
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 4.8e-14 84.7 53 69.8
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-11 77.0 59 59.3
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 1.3e-11 76.6 63 58.7
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 8.8e-08 63.9 81 43.2
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 7.5e-07 60.8 150 31.3


User provided reference genes

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