Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 5.3e-38 160.6 85 100.0
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 2.5e-32 141.7 84 90.5
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 3.4e-29 131.3 83 85.5
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.1e-27 126.3 83 80.7
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.1e-27 126.3 83 80.7
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.1e-27 126.3 83 80.7
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.9e-27 125.6 83 85.5
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 2.4e-27 125.2 83 80.7
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 3.0e-25 118.2 83 79.5
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 3.0e-25 118.2 83 79.5
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 1.3e-17 92.8 62 74.2
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 3.9e-17 91.3 77 66.2
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 5.1e-17 90.9 59 78.0
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 1.9e-16 89.0 54 77.8
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 1.3e-15 86.3 85 63.5
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 2.8e-15 85.1 61 70.5
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 1.8e-14 82.4 79 63.3
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 4.1e-14 81.3 75 61.3
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 1.2e-13 79.7 83 56.6
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 2.0e-13 79.0 68 64.7
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 3.4e-13 78.2 56 78.6
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 4.5e-13 77.8 74 62.2
MD16G1019400 Malus domestica HOM05D007313 ORTHO05D005299 4.5e-13 77.8 81 59.3
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 4.5e-13 77.8 63 68.3
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 5.9e-13 77.4 74 59.5
Sp1g23170 Schrenkiella parvula HOM05D007313 ORTHO05D005299 5.9e-13 77.4 56 76.8
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 5.9e-13 77.4 85 55.3
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 7.7e-13 77.0 68 64.7
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 1.0e-12 76.6 59 71.2
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 1.0e-12 76.6 59 71.2
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 1.0e-12 76.6 59 71.2
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 1.0e-12 76.6 59 71.2
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 1.0e-12 76.6 59 71.2
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 1.0e-12 76.6 89 58.4
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 1.3e-12 76.3 62 69.4
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 1.7e-12 75.9 63 66.7
A08p26710 Brassica napus HOM05D007313 ORTHO05D005299 1.7e-12 75.9 68 67.6
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 1.7e-12 75.9 63 66.7
BraA08t34617Z Brassica rapa HOM05D007313 ORTHO05D005299 1.7e-12 75.9 68 67.6
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 2.2e-12 75.5 56 75.0
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 2.2e-12 75.5 59 69.5
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 2.9e-12 75.1 62 67.7
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 2.9e-12 75.1 63 65.1
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 2.9e-12 75.1 84 58.3
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 2.9e-12 75.1 64 68.8
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 2.9e-12 75.1 59 69.5
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 3.8e-12 74.7 63 65.1
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 3.8e-12 74.7 63 65.1
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 3.8e-12 74.7 63 65.1
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 5.0e-12 74.3 59 69.5
Carub.0001s2549 Capsella rubella HOM05D007313 ORTHO05D005299 5.0e-12 74.3 56 75.0
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 8.5e-12 73.6 63 63.5
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 8.5e-12 73.6 63 63.5
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 8.5e-12 73.6 63 63.5
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 1.4e-11 72.8 56 73.2
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 1.4e-11 72.8 53 75.5
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 2.5e-11 72.0 59 67.8
Haze_10890 Corylus avellana HOM05D007313 ORTHO05D005299 2.5e-11 72.0 75 54.7
FAN22G0875 Fragaria x ananassa HOM05D007313 ORTHO05D005299 2.5e-11 72.0 65 69.2
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 3.2e-11 71.6 86 53.5
TPR.G18382 Trifolium pratense HOM05D008500 ORTHO05D005299 3.2e-11 71.6 58 65.5
Aa31LG7G9440 Aethionema arabicum HOM05D007313 ORTHO05D005299 9.4e-11 70.1 54 72.2
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 9.4e-11 70.1 59 66.1
FAN12G3843 Fragaria x ananassa HOM05D007313 ORTHO05D005299 1.2e-10 69.7 65 67.7
Glyma.07G104300 Glycine max HOM05D008500 ORTHO05D005299 1.2e-10 69.7 55 69.1
RcHm_v2.0_Chr4g0443131 Rosa chinensis HOM05D007313 ORTHO05D005299 1.2e-10 69.7 70 61.4
FAN07G0870 Fragaria x ananassa HOM05D007313 ORTHO05D005299 1.6e-10 69.3 57 71.9
Glyma.09G173300 Glycine max HOM05D008500 ORTHO05D005299 1.6e-10 69.3 55 67.3
Sabra10G0078300 Salix brachista HOM05D007313 ORTHO05D005299 1.6e-10 69.3 66 62.1
ClCG01G006530 Citrullus lanatus HOM05D007313 ORTHO05D005299 2.1e-10 68.9 78 55.1
FvH4_4g33670 Fragaria vesca HOM05D007313 ORTHO05D005299 2.1e-10 68.9 57 71.9
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 2.7e-10 68.6 85 52.9
AL1G40310 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 3.6e-10 68.2 62 66.1
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 3.6e-10 68.2 62 61.3
Psat7g008240 Pisum sativum HOM05D007313 ORTHO05D005299 3.6e-10 68.2 61 59.0
Phvul.002G320600 Phaseolus vulgaris HOM05D007313 ORTHO05D005299 4.6e-10 67.8 57 61.4
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 4.6e-10 67.8 85 52.9
MELO3C005274.2 Cucumis melo HOM05D007313 ORTHO05D005299 1.0e-09 66.6 70 57.1
Nn4g24351 Nelumbo nucifera HOM05D008500 ORTHO05D005299 1.0e-09 66.6 83 51.8
Phvul.004G148400 Phaseolus vulgaris HOM05D008500 ORTHO05D005299 1.0e-09 66.6 68 57.4
CiPaw.06G051300 Carya illinoinensis HOM05D007313 ORTHO05D005299 1.8e-09 65.9 84 51.2
Lj4g0008951 Lotus japonicus HOM05D007313 ORTHO05D005299 1.8e-09 65.9 56 64.3
Cpa.g.sc3.366 Carica papaya HOM05D008500 ORTHO05D005299 3.9e-09 64.7 84 52.4
TPR.G27729 Trifolium pratense HOM05D007313 ORTHO05D005299 3.9e-09 64.7 72 50.0
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 3.9e-09 64.7 80 50.0
VMungo0464G1302 Vigna mungo HOM05D008500 ORTHO05D005299 5.1e-09 64.3 66 57.6
FvH4_5g17640 Fragaria vesca HOM05D008500 ORTHO05D005299 6.7e-09 63.9 79 54.4
RcHm_v2.0_Chr7g0178031 Rosa chinensis HOM05D008500 ORTHO05D005299 6.7e-09 63.9 79 54.4
Ca_17263_v3 Cicer arietinum L. HOM05D007313 ORTHO05D005299 8.8e-09 63.5 61 55.7
Ca_17284_v3 Cicer arietinum L. HOM05D007313 ORTHO05D005299 8.8e-09 63.5 61 55.7
FAN04G2293 Fragaria x ananassa HOM05D008500 ORTHO05D005299 8.8e-09 63.5 68 57.4
FAN08G2086 Fragaria x ananassa HOM05D008500 ORTHO05D005299 8.8e-09 63.5 68 57.4
Medtr6g071040 Medicago truncatula HOM05D008500 ORTHO05D005299 8.8e-09 63.5 61 60.7
Medtr8g105190 Medicago truncatula HOM05D007313 ORTHO05D005299 8.8e-09 63.5 69 55.1
AT1G24600 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 1.1e-08 63.2 55 67.3
MBI19_g22070_MAGBIO Magnolia biondii HOM05D008500 ORTHO05D005299 1.1e-08 63.2 69 56.5
Nn3g18353 Nelumbo nucifera HOM05D008500 ORTHO05D005299 1.1e-08 63.2 61 54.1
VMungo0540G1213 Vigna mungo HOM05D007313 ORTHO05D005299 1.1e-08 63.2 52 63.5
FAN18G0107 Fragaria x ananassa HOM05D008500 ORTHO05D005299 1.9e-08 62.4 79 53.2
Lsat_1_v5_gn_8_46180 Lactuca sativa HOM05D007313 ORTHO05D005299 1.9e-08 62.4 75 50.7
C05p25550 Brassica napus HOM05D007313 ORTHO05D005299 2.5e-08 62.0 65 58.5
BolC5t31282H Brassica oleracea HOM05D007313 ORTHO05D005299 2.5e-08 62.0 65 58.5
Psat1g030680 Pisum sativum HOM05D008500 ORTHO05D005299 3.3e-08 61.6 63 57.1
BcaB03g14014 Brassica carinata HOM05D007313 ORTHO05D005299 4.3e-08 61.2 56 67.9
BcaC06g35248 Brassica carinata HOM05D007313 ORTHO05D005299 7.4e-08 60.5 56 67.9
A07p12350 Brassica napus HOM05D007313 ORTHO05D005299 7.4e-08 60.5 56 67.9
C07p18250 Brassica napus HOM05D007313 ORTHO05D005299 7.4e-08 60.5 56 67.9
BolC7t42335H Brassica oleracea HOM05D007313 ORTHO05D005299 7.4e-08 60.5 56 67.9
BraA07t29016Z Brassica rapa HOM05D007313 ORTHO05D005299 7.4e-08 60.5 56 67.9
CANSAT01G0361 Cannabis sativa HOM05D007313 ORTHO05D005299 7.4e-08 60.5 57 57.9
FAN13G1653 Fragaria x ananassa HOM05D008500 ORTHO05D005299 7.4e-08 60.5 68 55.9
PGSC0003DMG400029516 Solanum tuberosum HOM05D007313 ORTHO05D005299 7.4e-08 60.5 54 61.1
BcaC05g26505 Brassica carinata HOM05D007313 ORTHO05D005299 9.7e-08 60.1 65 56.9
Glyma.05G238200 Glycine max HOM05D007313 ORTHO05D005299 9.7e-08 60.1 52 57.7
Lsat_1_v5_gn_4_12541 Lactuca sativa HOM05D007313 ORTHO05D005299 9.7e-08 60.1 72 45.8
Manes.14G157100 Manihot esculenta HOM05D008500 ORTHO05D005299 1.3e-07 59.7 63 54.0
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 1.3e-07 59.7 54 61.1
arahy.Tifrunner.gnm1.ann1.B8M078 Arachis hypogaea HOM05D008500 ORTHO05D005299 1.7e-07 59.3 58 65.5
Glyma.08G045300 Glycine max HOM05D007313 ORTHO05D005299 1.7e-07 59.3 62 53.2
arahy.Tifrunner.gnm1.ann1.J4XL7B Arachis hypogaea HOM05D008500 ORTHO05D005299 2.2e-07 58.9 58 63.8
Lalb_Chr05g0221531 Lupinus albus HOM05D008500 ORTHO05D005299 2.2e-07 58.9 71 53.5
CiPaw.15G146300 Carya illinoinensis HOM05D008500 ORTHO05D005299 3.7e-07 58.2 72 51.4
Lalb_Chr16g0386911 Lupinus albus HOM05D008500 ORTHO05D005299 3.7e-07 58.2 57 63.2
QL10p031374 Quercus lobata HOM05D008500 ORTHO05D005299 3.7e-07 58.2 47 68.1
ECA233G5799 Erigeron canadensis HOM05D007313 ORTHO05D005299 4.8e-07 57.8 91 49.5
Duzib205G0189 Durio zibethinus HOM05D008500 ORTHO05D005299 6.3e-07 57.4 67 56.7
Thecc.03G061000 Theobroma cacao HOM05D008500 ORTHO05D005299 6.3e-07 57.4 75 53.3
Solyc04g007990.1 Solanum lycopersicum HOM05D007313 ORTHO05D005299 8.2e-07 57.0 83 47.0
CsaV3_5G028140 Cucumis sativus L. HOM05D007313 ORTHO05D005299 1.1e-06 56.6 60 55.0
MBI13_g37857_MAGBIO Magnolia biondii HOM05D008500 ORTHO05D005299 1.4e-06 56.2 57 68.4
Hma1.2p1_0031F.1_g018580 Hydrangea macrophylla HOM05D007313 ORTHO05D005299 2.4e-06 55.5 83 50.6
Sed0026425 Sechium edule HOM05D007313 ORTHO05D005299 2.4e-06 55.5 57 59.6
A09p38970 Brassica napus HOM05D007313 ORTHO05D005299 3.1e-06 55.1 59 57.6
Gohir.D12G270900 Gossypium hirsutum HOM05D008500 ORTHO05D005299 3.1e-06 55.1 75 50.7
BcaC05g26701 Brassica carinata HOM05D007313 ORTHO05D005299 6.9e-06 53.9 71 53.5
Gorai.008G291300 Gossypium raimondii HOM05D008500 ORTHO05D005299 9.1e-06 53.5 75 53.3
PGR044G0774 Punica granatum HOM05D008500 ORTHO05D005299 9.1e-06 53.5 84 45.2


User provided reference genes

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