Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G287500 Theobroma cacao HOM05D006947 ORTHO05D008818 0.0e+00 1332.4 700 100.0
COL.COLO4_13100 Corchorus olitorius HOM05D006947 ORTHO05D008818 0.0e+00 1077.8 695 81.7
Duzib251G0407 Durio zibethinus HOM05D006947 ORTHO05D008818 2.4e-311 1071.6 694 81.7
Gorai.002G176700 Gossypium raimondii HOM05D006947 ORTHO05D008818 6.2e-302 1040.4 692 80.2
Gohir.1Z015600 Gossypium hirsutum HOM05D006947 ORTHO05D008818 2.2e-275 952.2 692 76.3
Gohir.D01G143300 Gossypium hirsutum HOM05D006947 ORTHO05D008818 1.7e-267 926.0 578 83.9
Gohir.A01G150136 Gossypium hirsutum HOM05D006947 ORTHO05D008818 1.5e-260 902.9 692 72.4
Ciclev10014242m.g Citrus clementina HOM05D006947 ORTHO05D008818 7.2e-258 894.0 697 68.9
Dinv28045 Davidia involucrata HOM05D006947 ORTHO05D008818 1.4e-248 863.2 700 68.3
CiPaw.06G048400 Carya illinoinensis HOM05D006947 ORTHO05D008818 2.2e-246 855.9 700 66.6
Manes.17G080500 Manihot esculenta HOM05D006947 ORTHO05D008818 2.0e-244 849.4 700 64.4
TAR622G0063 Trochodendron aralioides HOM05D006947 ORTHO05D008818 2.0e-244 849.4 695 67.1
Haze_10941 Corylus avellana HOM05D006947 ORTHO05D008818 2.9e-243 845.5 758 62.5
Cfa014981 Carpinus fangiana HOM05D006947 ORTHO05D008818 3.8e-243 845.1 701 65.9
GSVIVG01011706001 Vitis vinifera HOM05D006947 ORTHO05D008818 7.5e-239 830.9 606 72.4
TWI74G1199 Tripterygium wilfordii HOM05D006947 ORTHO05D008818 5.9e-236 821.2 698 64.6
RcHm_v2.0_Chr4g0443581 Rosa chinensis HOM05D006947 ORTHO05D008818 1.3e-235 820.1 708 64.8
Potri.010G110200 Populus trichocarpa HOM05D006947 ORTHO05D008818 1.6e-233 813.1 699 63.2
CSS0036590 Camellia sinensis var. sinensis HOM05D006947 ORTHO05D008818 6.1e-233 811.2 695 64.3
Eucgr.B02936 Eucalyptus grandis HOM05D006947 ORTHO05D008818 8.8e-232 807.4 699 63.1
FAN07G0937 Fragaria x ananassa HOM05D006947 ORTHO05D008818 8.8e-232 807.4 716 64.0
Atru.chr11.650 Acer truncatum HOM05D006947 ORTHO05D008818 4.1e-229 798.5 701 63.5
ClCG01G006350 Citrullus lanatus HOM05D006947 ORTHO05D008818 1.6e-228 796.6 698 63.6
FAN12G3265 Fragaria x ananassa HOM05D006947 ORTHO05D008818 7.7e-228 794.3 736 61.8
Hma1.2p1_0330F.1_g127400 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 5.0e-227 791.6 602 69.6
MD16G1022800 Malus domestica HOM05D006947 ORTHO05D008818 1.1e-226 790.4 701 62.9
QL03p033900 Quercus lobata HOM05D006947 ORTHO05D008818 4.7e-225 785.0 705 62.4
Potri.008G131900 Populus trichocarpa HOM05D006947 ORTHO05D008818 2.6e-223 779.2 699 60.8
MELO3C005295.2 Cucumis melo HOM05D006947 ORTHO05D008818 4.5e-220 768.5 635 66.0
PGR102G1367 Punica granatum HOM05D006947 ORTHO05D008818 2.5e-218 762.7 687 62.0
CsaV3_5G028330 Cucumis sativus L. HOM05D006947 ORTHO05D008818 7.3e-218 761.1 633 65.4
Sed0026926 Sechium edule HOM05D006947 ORTHO05D008818 1.6e-217 760.0 695 61.0
Lalb_Chr10g0096001 Lupinus albus HOM05D006947 ORTHO05D008818 1.0e-216 757.3 637 64.7
THA.LOC104822169 Tarenaya hassleriana HOM05D006947 ORTHO05D008818 3.7e-214 748.8 699 59.8
Nitab4.5_0000282g0010 Nicotiana tabacum HOM05D006947 ORTHO05D008818 1.6e-212 743.4 698 59.5
Peaxi162Scf00376g00128 Petunia axillaris HOM05D006947 ORTHO05D008818 5.9e-212 741.5 639 63.2
Glyma.09G120400 Glycine max HOM05D006947 ORTHO05D008818 1.0e-211 740.7 702 58.8
Cc11_g08260 Coffea canephora HOM05D006947 ORTHO05D008818 7.3e-210 734.6 691 58.6
Sabra10G0080600 Salix brachista HOM05D006947 ORTHO05D008818 1.2e-209 733.8 603 64.2
Thhalv10006791m.g Eutrema salsugineum HOM05D006947 ORTHO05D008818 4.7e-209 731.9 669 61.9
Prupe.1G330100 Prunus persica HOM05D006947 ORTHO05D008818 3.1e-208 729.2 572 68.9
DCAR_026786 Daucus carota HOM05D006947 ORTHO05D008818 2.0e-207 726.5 616 63.8
FvH4_4g34070 Fragaria vesca HOM05D006947 ORTHO05D008818 2.6e-207 726.1 550 71.1
CARHR023620 Cardamine hirsuta HOM05D006947 ORTHO05D008818 1.7e-206 723.4 685 60.4
Sp1g20640 Schrenkiella parvula HOM05D006947 ORTHO05D008818 6.4e-206 721.5 671 61.7
BcaB03g11927 Brassica carinata HOM05D006947 ORTHO05D008818 2.4e-205 719.5 701 58.8
HanXRQChr12g0363561 Helianthus annuus HOM05D006947 ORTHO05D008818 2.7e-204 716.1 699 59.5
Carub.0001s2275 Capsella rubella HOM05D006947 ORTHO05D008818 4.6e-204 715.3 670 61.0
Phvul.003G022200 Phaseolus vulgaris HOM05D006947 ORTHO05D008818 2.5e-202 709.5 637 61.5
C08p21780 Brassica napus HOM05D006947 ORTHO05D008818 7.3e-202 708.0 667 60.3
BcaC07g39188 Brassica carinata HOM05D006947 ORTHO05D008818 1.6e-201 706.8 667 60.1
AL1G36850 Arabidopsis lyrata HOM05D006947 ORTHO05D008818 6.2e-201 704.9 663 60.5
BolC8t49817H Brassica oleracea HOM05D006947 ORTHO05D008818 6.2e-201 704.9 667 60.0
EL10Ac6g14173 Beta vulgaris HOM05D006947 ORTHO05D008818 1.8e-200 703.4 696 56.9
Sopen05g023090 Solanum pennellii HOM05D006947 ORTHO05D008818 1.8e-200 703.4 638 60.3
A08p28310 Brassica napus HOM05D006947 ORTHO05D008818 3.1e-200 702.6 668 60.3
Sc14g0006260 Simmondsia chinensis HOM05D006947 ORTHO05D008818 1.5e-199 700.3 684 58.5
Aa31LG7G7190 Aethionema arabicum HOM05D006947 ORTHO05D008818 4.4e-199 698.7 673 59.6
AT1G23180 Arabidopsis thaliana HOM05D006947 ORTHO05D008818 5.8e-199 698.4 711 57.9
BraA08t34762Z Brassica rapa HOM05D006947 ORTHO05D008818 7.5e-199 698.0 667 59.8
Hma1.2p1_0330F.1_g127410 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 2.2e-198 696.4 481 74.0
Sc14g0007020 Simmondsia chinensis HOM05D006947 ORTHO05D008818 4.9e-198 695.3 684 58.0
Solyc05g026560.3 Solanum lycopersicum HOM05D006947 ORTHO05D008818 1.4e-197 693.7 638 59.9
VMungo1215G1110 Vigna mungo HOM05D006947 ORTHO05D008818 3.2e-197 692.6 618 61.5
CANSAT01G1138 Cannabis sativa HOM05D006947 ORTHO05D008818 3.5e-196 689.1 686 56.0
AUR62014176 Chenopodium quinoa HOM05D006947 ORTHO05D008818 1.7e-195 686.8 656 57.0
Lj6A742T64 Lonicera japonica HOM05D006947 ORTHO05D008818 1.5e-194 683.7 628 60.5
MBI15_g36991_MAGBIO Magnolia biondii HOM05D006947 ORTHO05D008818 1.9e-194 683.3 627 60.1
AUR62039529 Chenopodium quinoa HOM05D006947 ORTHO05D008818 2.5e-194 682.9 692 55.5
arahy.Tifrunner.gnm1.ann1.8B134P Arachis hypogaea HOM05D006947 ORTHO05D008818 4.3e-194 682.2 640 59.4
MSTRG.907 Avicennia marina HOM05D006947 ORTHO05D008818 1.2e-193 680.6 632 60.0
Ca_12591_v3 Cicer arietinum L. HOM05D006947 ORTHO05D008818 5.2e-192 675.2 632 59.8
arahy.Tifrunner.gnm1.ann1.573L1D Arachis hypogaea HOM05D006947 ORTHO05D008818 8.9e-192 674.5 582 62.9
ECA233G0254 Erigeron canadensis HOM05D006947 ORTHO05D008818 1.3e-190 670.6 581 64.0
Lsat_1_v5_gn_8_44260 Lactuca sativa HOM05D006947 ORTHO05D008818 1.7e-190 670.2 697 56.1
Ah.03g137350 Amaranthus hybridus HOM05D006947 ORTHO05D008818 2.3e-187 659.8 693 54.0
TPR.G36974 Trifolium pratense HOM05D006947 ORTHO05D008818 1.5e-186 657.1 626 59.4
Medtr1g031750 Medicago truncatula HOM05D006947 ORTHO05D008818 1.9e-186 656.8 596 60.7
Rhsim09G0093800 Rhododendron simsii HOM05D006947 ORTHO05D008818 4.7e-185 652.1 730 53.2
Actinidia36648 Actinidia chinensis HOM05D006947 ORTHO05D008818 2.6e-183 646.4 702 55.6
Hund24964 Selenicereus undatus HOM05D006947 ORTHO05D008818 6.6e-179 631.7 760 51.3
Aqoxy3G04093 Aquilegia oxysepala HOM05D006947 ORTHO05D008818 2.5e-178 629.8 588 59.9
Migut.L00588 Erythranthe guttata HOM05D006947 ORTHO05D008818 2.5e-178 629.8 644 56.4
Psat6g044440 Pisum sativum HOM05D006947 ORTHO05D008818 5.8e-175 618.6 561 60.4
unitig_52.g17412 Utricularia gibba HOM05D006947 ORTHO05D008818 7.6e-175 618.2 633 54.7
Nitab4.5_0000018g0180 Nicotiana tabacum HOM05D006947 ORTHO05D008818 2.2e-174 616.7 557 61.8
MBI15_g41220_MAGBIO Magnolia biondii HOM05D006947 ORTHO05D008818 6.6e-171 605.1 616 55.0
Glyma.07G166300 Glycine max HOM05D006947 ORTHO05D008818 9.6e-170 601.3 492 64.4
ATR0317G087 Amborella trichopoda HOM05D006947 ORTHO05D008818 8.1e-169 598.2 694 51.3
HPP92_024592 Vanilla planifolia HOM05D006947 ORTHO05D008818 5.6e-162 575.5 622 52.3
PSO782G4825 Papaver somniferum HOM05D006947 ORTHO05D008818 4.2e-157 559.3 547 56.3
PSO063G5930 Papaver somniferum HOM05D006947 ORTHO05D008818 5.5e-157 558.9 547 56.5
vmacro10663 Vaccinium macrocarpon HOM05D006947 ORTHO05D008818 9.3e-157 558.1 763 47.2
CDE11G0632 Ceratophyllum demersum HOM05D006947 ORTHO05D008818 3.5e-156 556.2 633 52.1
Os01g0524700 Oryza sativa ssp. japonica HOM05D006947 ORTHO05D008818 1.7e-142 510.8 622 46.3
HPP92_024520 Vanilla planifolia HOM05D006947 ORTHO05D008818 1.4e-136 491.1 622 47.4
SalBow8G5231 Salvia bowleyana HOM05D006947 ORTHO05D008818 7.0e-128 462.2 420 61.4
Lj2g0020590 Lotus japonicus HOM05D006947 ORTHO05D008818 4.5e-127 459.5 426 59.9
Cpa.g.sc2.239 Carica papaya HOM05D006947 ORTHO05D008818 5.2e-107 392.9 462 48.9
Migut.O00818 Erythranthe guttata HOM05D006947 ORTHO05D008818 2.4e-104 384.0 415 55.4
AagrBONN_evm.TU.Sc2ySwM_117.3643 Anthoceros agrestis HOM05D006947 ORTHO05D008818 2.6e-90 337.4 365 49.6
Pp3c18_19500 Physcomitrium patens HOM05D006947 ORTHO05D008818 1.6e-87 328.2 706 33.0
Cpa.g.sc1084.1 Carica papaya HOM05D006947 ORTHO05D008818 1.5e-85 321.6 275 64.0
Nn4g24252 Nelumbo nucifera HOM05D006947 ORTHO05D008818 2.0e-82 311.2 307 59.3
Nitab4.5_0000532g0040 Nicotiana tabacum HOM05D006947 ORTHO05D008818 2.6e-82 310.8 237 69.6
SalBow8G4359 Salvia bowleyana HOM05D006947 ORTHO05D008818 1.0e-70 272.3 287 53.0
MD13G1021800 Malus domestica HOM05D006947 ORTHO05D008818 5.2e-67 260.0 284 53.5
Nitab4.5_0000532g0050 Nicotiana tabacum HOM05D006947 ORTHO05D008818 2.2e-65 254.6 249 56.2
Oeu023430.2 Olea europaea HOM05D006947 ORTHO05D008818 2.3e-62 244.6 723 31.5
Mapoly0112s0009 Marchantia polymorpha HOM05D006947 ORTHO05D008818 7.4e-53 213.0 445 33.9
CBR_g50426 Chara braunii HOM05D006947 ORTHO05D008818 1.4e-40 172.2 433 32.3
GSVIVG01031683001 Vitis vinifera HOM05D006947 ORTHO05D005406 1.7e-33 148.7 155 55.5
Hma1.2p1_0330F.1_g127420 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 1.9e-24 118.6 104 61.5
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 6.7e-22 110.2 144 46.5
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 1.4e-14 85.9 105 49.5
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 5.7e-13 80.5 95 50.5
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 5.7e-13 80.5 124 41.1
ClCG11G006020 Citrullus lanatus HOM05D000215 ORTHO05D008904 1.4e-06 59.3 142 31.7
MELO3C008310.2 Cucumis melo HOM05D000215 ORTHO05D008904 1.4e-06 59.3 142 31.0
Lsat_1_v5_gn_4_154640 Lactuca sativa HOM05D001865 ORTHO05D001815 2.3e-06 58.5 188 27.7
AUR62042575 Chenopodium quinoa HOM05D000716 ORTHO05D002658 5.2e-06 57.4 252 23.4
DCAR_025873 Daucus carota HOM05D001865 ORTHO05D001815 6.7e-06 57.0 172 32.0
ATR0582G114 Amborella trichopoda HOM05D001356 ORTHO05D005768 8.8e-06 56.6 209 29.2


User provided reference genes

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