Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 9.2e-127 456.8 221 100.0
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 6.5e-88 327.8 210 76.2
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 2.5e-87 325.9 210 78.1
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 7.7e-81 304.3 210 70.5
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.7e-80 303.1 210 70.5
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 8.5e-80 300.8 210 69.0
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 1.9e-79 299.7 210 68.1
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 2.5e-79 299.3 210 69.5
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.6e-78 296.6 207 69.1
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 3.0e-77 292.4 210 66.2
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 3.0e-77 292.4 211 67.8
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 3.9e-77 292.0 217 67.3
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 3.9e-77 292.0 210 67.6
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 8.8e-77 290.8 210 67.6
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 2.0e-76 289.7 210 67.6
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.6e-76 289.3 211 67.8
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 3.3e-76 288.9 210 67.6
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 3.3e-76 288.9 210 68.6
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 5.7e-76 288.1 210 69.5
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 1.3e-75 287.0 211 67.8
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.2e-75 286.2 211 67.8
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 4.8e-75 285.0 210 66.2
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 8.2e-75 284.3 210 67.1
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 8.2e-75 284.3 207 67.1
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 1.1e-74 283.9 210 66.2
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 6.9e-74 281.2 210 64.8
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 1.5e-73 280.0 210 65.2
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.0e-73 279.6 207 67.1
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 2.0e-73 279.6 210 64.3
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 3.4e-73 278.9 211 65.9
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 4.5e-73 278.5 205 67.8
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 4.5e-73 278.5 207 66.7
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.5e-73 278.5 210 63.8
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 4.5e-73 278.5 210 67.1
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 7.7e-73 277.7 210 64.3
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 7.7e-73 277.7 210 64.3
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 1.0e-72 277.3 210 62.4
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 1.7e-72 276.6 211 64.9
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.8e-72 275.4 210 64.8
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.8e-72 275.4 210 64.8
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 5.0e-72 275.0 210 66.2
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 5.0e-72 275.0 210 63.3
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.0e-72 275.0 210 63.3
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 5.0e-72 275.0 210 63.3
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 8.5e-72 274.2 210 62.4
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 1.4e-71 273.5 210 62.9
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 1.9e-71 273.1 211 64.5
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 2.5e-71 272.7 210 63.8
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 2.5e-71 272.7 207 65.2
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 2.5e-71 272.7 211 62.6
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.2e-71 272.3 216 63.0
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 3.2e-71 272.3 210 64.3
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 3.2e-71 272.3 210 65.2
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 3.2e-71 272.3 210 65.2
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 5.5e-71 271.6 207 63.3
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.2e-71 271.2 211 65.4
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 9.4e-71 270.8 210 61.9
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 3.6e-70 268.9 207 61.8
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.7e-70 268.5 224 60.7
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 4.7e-70 268.5 210 62.4
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 4.7e-70 268.5 198 65.7
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 6.1e-70 268.1 211 63.5
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 7.9e-70 267.7 207 61.4
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 1.0e-69 267.3 207 65.7
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.2e-69 265.0 211 63.0
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 1.1e-68 263.8 207 63.3
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.0e-68 263.1 210 63.8
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 2.6e-68 262.7 275 52.7
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 3.3e-68 262.3 210 61.4
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 3.3e-68 262.3 210 60.0
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 4.4e-68 261.9 210 62.4
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 7.4e-68 261.2 210 61.9
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 1.7e-67 260.0 210 60.5
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 4.8e-67 258.5 210 60.0
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 4.8e-67 258.5 184 67.4
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 8.2e-67 257.7 210 60.5
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 8.2e-67 257.7 210 61.0
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 1.1e-66 257.3 210 62.4
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 3.1e-66 255.8 219 61.2
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 5.3e-66 255.0 207 60.9
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.0e-66 254.6 211 61.6
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 1.2e-65 253.8 210 61.9
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 2.6e-65 252.7 210 60.0
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 3.5e-65 252.3 210 61.0
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 5.5e-63 245.0 210 60.0
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 9.4e-63 244.2 210 58.1
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 9.4e-63 244.2 210 60.0
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 4.7e-62 241.9 266 49.2
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 4.0e-61 238.8 196 62.8
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 2.2e-59 233.0 207 59.9
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 3.7e-59 232.3 210 57.1
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 4.8e-59 231.9 211 56.4
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 3.1e-58 229.2 210 57.1
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 4.0e-53 212.2 164 65.9
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.5e-52 210.3 267 46.4
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.4e-52 209.1 188 58.0
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 4.4e-52 208.8 164 65.2
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 8.3e-51 204.5 172 59.3
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 3.8e-48 195.7 132 72.0
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 1.9e-47 193.4 164 57.9
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 2.4e-42 176.4 184 53.3
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 4.7e-38 162.2 210 44.8
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 2.2e-35 153.3 149 55.0
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 2.9e-35 152.9 110 62.7
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 2.4e-34 149.8 132 56.8
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 7.0e-34 148.3 180 50.0
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 2.7e-33 146.4 207 37.7
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.1e-31 141.0 182 42.9
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 6.2e-30 135.2 166 44.6
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 3.4e-28 129.4 188 44.7
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 3.4e-28 129.4 160 45.0
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 3.7e-27 125.9 210 38.6
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 1.2e-22 110.9 71 67.6
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 5.2e-21 105.5 144 41.0
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 8.9e-21 104.8 131 45.8
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 4.9e-19 99.0 188 39.9
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 2.1e-17 93.6 86 52.3
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 7.8e-17 91.7 164 34.8
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 2.3e-16 90.1 93 47.3
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 9.5e-15 84.7 47 80.9
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 3.6e-14 82.8 197 31.5
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 3.1e-13 79.7 47 76.6
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 3.1e-13 79.7 47 76.6
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 3.4e-12 76.3 47 72.3
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 2.9e-11 73.2 141 34.8
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 2.9e-11 73.2 67 41.8
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 3.8e-11 72.8 55 61.8
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 7.1e-10 68.6 62 48.4
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 9.2e-10 68.2 76 48.7
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 1.2e-09 67.8 61 59.0
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 4.6e-09 65.9 211 25.6
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 7.8e-09 65.1 64 51.6
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 2.3e-08 63.5 64 51.6
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 8.6e-08 61.6 192 24.5


User provided reference genes

Program Settings