Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 5.3e-139 497.7 248 100.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 2.9e-129 465.3 248 93.5
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 4.2e-128 461.5 249 93.2
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.8e-123 446.0 248 89.5
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.4e-123 445.7 248 89.5
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.5e-122 443.0 246 88.6
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.5e-122 443.0 246 88.6
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 3.4e-122 441.8 248 89.1
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 7.7e-122 440.7 246 88.2
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 5.0e-113 411.4 249 82.7
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 6.1e-111 404.4 250 80.0
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.0e-110 402.1 250 81.2
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 6.7e-110 401.0 249 80.3
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 8.8e-110 400.6 248 80.2
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.2e-109 400.2 250 78.4
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 4.4e-109 398.3 250 80.4
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.7e-108 396.4 248 78.2
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 2.2e-108 396.0 250 78.4
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 3.7e-108 395.2 249 79.1
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 3.7e-108 395.2 249 79.1
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 4.8e-108 394.8 250 78.8
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 6.3e-108 394.4 248 77.8
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 8.2e-108 394.0 249 79.9
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 2.0e-106 389.4 239 79.9
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 2.7e-106 389.0 250 78.4
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 3.5e-106 388.7 249 78.7
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 3.5e-106 388.7 250 76.4
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 5.9e-106 387.9 250 78.8
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.0e-105 387.1 250 75.6
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.0e-105 387.1 250 77.2
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.0e-105 387.1 251 79.3
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.3e-105 386.7 250 76.0
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.7e-105 386.3 250 77.2
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 2.2e-105 386.0 250 76.0
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.9e-105 385.6 246 77.2
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 2.9e-105 385.6 250 78.0
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 5.0e-105 384.8 248 75.8
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.2e-104 382.1 250 78.0
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 9.4e-104 380.6 250 75.2
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.2e-103 380.2 250 78.4
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.6e-103 379.8 249 75.1
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 2.7e-103 379.0 249 76.7
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 4.7e-103 378.3 249 74.7
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 4.7e-103 378.3 250 75.6
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.0e-102 377.1 242 76.0
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 2.3e-102 375.9 249 74.7
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.3e-102 375.9 249 75.5
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 2.3e-102 375.9 251 76.5
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.0e-102 375.6 260 72.7
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.0e-102 375.6 249 74.3
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.0e-102 375.2 250 74.0
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 4.0e-102 375.2 250 75.6
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 4.0e-102 375.2 248 75.8
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 6.8e-102 374.4 249 75.5
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 6.8e-102 374.4 252 73.8
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.8e-102 374.4 249 75.1
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 8.8e-102 374.0 249 75.1
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 8.8e-102 374.0 249 75.1
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 2.0e-101 372.9 249 74.7
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.6e-101 372.5 249 75.1
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.6e-101 372.5 251 73.7
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 2.6e-101 372.5 248 75.4
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.6e-101 372.5 248 75.4
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 2.6e-101 372.5 252 75.4
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 2.6e-101 372.5 248 73.8
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 3.4e-101 372.1 249 75.1
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.4e-101 372.1 248 75.4
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 5.7e-101 371.3 252 74.6
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 9.8e-101 370.5 248 75.0
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 9.8e-101 370.5 250 75.2
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.7e-100 369.8 248 75.0
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 2.2e-100 369.4 252 73.4
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.8e-100 369.0 248 71.4
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 3.7e-100 368.6 252 74.2
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 6.3e-100 367.9 248 72.6
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 8.3e-100 367.5 249 73.9
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 8.3e-100 367.5 252 74.2
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.1e-99 367.1 250 73.6
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 1.1e-99 367.1 250 74.0
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 2.4e-99 365.9 243 74.9
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 3.1e-99 365.5 250 74.0
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 5.4e-99 364.8 243 75.7
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 9.1e-99 364.0 240 75.0
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-98 363.6 252 72.6
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 2.7e-98 362.5 252 72.2
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 3.5e-98 362.1 247 73.7
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 4.5e-98 361.7 242 75.2
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 4.5e-98 361.7 242 75.2
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 4.5e-98 361.7 247 73.3
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 5.9e-98 361.3 243 72.0
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 5.9e-98 361.3 240 76.7
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 7.7e-98 360.9 247 73.7
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 7.7e-98 360.9 252 69.4
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.3e-97 360.1 248 71.4
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.3e-97 359.4 242 74.4
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.9e-97 359.0 251 72.1
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.9e-97 359.0 248 71.4
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 8.6e-97 357.5 273 68.1
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 8.6e-97 357.5 273 68.1
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 8.6e-97 357.5 250 68.8
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.1e-96 357.1 248 69.8
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.5e-96 356.7 252 69.0
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 5.5e-96 354.8 252 72.2
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.2e-95 353.6 246 69.9
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 3.6e-95 352.1 249 71.1
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 4.7e-95 351.7 250 71.2
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 8.0e-95 350.9 241 70.5
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.0e-94 350.5 246 72.8
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.8e-94 349.7 241 70.5
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 3.0e-94 349.0 252 70.6
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.6e-93 345.9 250 70.8
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.6e-93 345.9 224 78.1
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 9.8e-93 344.0 244 69.3
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 2.2e-92 342.8 243 70.4
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 3.7e-92 342.0 293 62.1
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 3.8e-89 332.0 244 68.9
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.1e-88 330.5 292 61.6
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.9e-88 329.7 184 88.0
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 4.3e-88 328.6 234 70.1
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.6e-87 325.5 197 81.2
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.0e-86 323.9 244 64.8
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.4e-86 323.6 248 66.9
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.0e-85 319.7 179 88.8
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 5.4e-83 311.6 255 62.7
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 4.6e-82 308.5 250 64.8
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.3e-81 307.0 252 62.3
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 2.5e-80 302.8 174 84.5
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 3.4e-77 292.4 175 80.0
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 9.8e-77 290.8 248 62.9
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 9.8e-77 290.8 242 64.9
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.9e-75 286.6 251 61.0
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.3e-68 263.8 147 88.4
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.3e-68 263.8 147 88.4
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 3.7e-68 262.3 153 81.7
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 2.1e-66 256.5 186 69.9
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 6.6e-65 251.5 198 57.6
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.4e-54 216.5 180 57.2
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.6e-50 203.8 175 60.0
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.6e-50 203.8 183 59.6
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 7.3e-48 194.9 189 57.7
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 7.3e-48 194.9 189 57.7
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.1e-43 181.0 110 80.9
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 6.0e-42 175.3 157 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.8e-38 163.7 141 56.0
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.1e-35 154.5 88 83.0
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 2.0e-29 133.7 73 90.4
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 4.6e-26 122.5 63 90.5
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 6.1e-26 122.1 73 79.5
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 7.4e-24 115.2 174 37.9
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.8e-22 110.5 99 59.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.8e-22 110.5 99 59.6
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.8e-22 110.5 108 60.2
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.4e-22 110.2 168 37.5
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 1.2e-21 107.8 75 74.7
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 6.3e-15 85.5 94 55.3
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 1.8e-14 84.0 83 59.0
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 6.1e-10 68.9 236 27.5
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 3.9e-09 66.2 52 57.7
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.1e-08 64.7 169 29.0
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 2.6e-08 63.5 54 61.1
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 9.7e-08 61.6 38 78.9
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 6.3e-07 58.9 65 47.7
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 9.1e-06 55.1 45 55.6


User provided reference genes

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