Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G281500 Theobroma cacao HOM05D007874 ORTHO05D009614 5.4e-78 294.3 150 100.0
Duzib251G0922 Durio zibethinus HOM05D007874 ORTHO05D009614 3.0e-44 182.2 158 65.8
Duzib248G1518 Durio zibethinus HOM05D007874 ORTHO05D009614 3.5e-37 158.7 111 73.9
Ciclev10017051m.g Citrus clementina HOM05D007874 ORTHO05D009614 2.1e-34 149.4 156 55.1
Gorai.002G179200 Gossypium raimondii HOM05D007874 ORTHO05D009614 6.4e-31 137.9 160 57.5
Gohir.D01G145200 Gossypium hirsutum HOM05D007874 ORTHO05D009614 2.4e-30 136.0 163 54.6
Manes.17G076900 Manihot esculenta HOM05D007874 ORTHO05D009614 5.6e-27 124.8 146 51.4
Potri.008G129200 Populus trichocarpa HOM05D007874 ORTHO05D009614 8.2e-26 120.9 143 48.3
CiPaw.05G249700 Carya illinoinensis HOM05D007874 ORTHO05D009614 3.4e-24 115.5 151 49.7
QL01p001738 Quercus lobata HOM05D007874 ORTHO05D009614 1.3e-23 113.6 156 48.7
Sabra10G0083200 Salix brachista HOM05D007874 ORTHO05D009614 3.2e-22 109.0 125 51.2
Haze_11010 Corylus avellana HOM05D007874 ORTHO05D009614 2.3e-20 102.8 138 46.4
Sabra08G0097900 Salix brachista HOM05D007874 ORTHO05D009614 1.5e-19 100.1 141 44.0
Manes.15G127500 Manihot esculenta HOM05D007874 ORTHO05D009614 4.3e-19 98.6 142 49.3
Cpa.g.sc65.135 Carica papaya HOM05D007874 ORTHO05D009614 1.6e-18 96.7 149 46.3
CiPaw.06G012000 Carya illinoinensis HOM05D007874 ORTHO05D009614 8.2e-18 94.4 154 44.2
Atru.chr11.536 Acer truncatum HOM05D007874 ORTHO05D009614 5.3e-17 91.7 104 51.0
Psat7g128240 Pisum sativum HOM05D007874 ORTHO05D009614 1.5e-16 90.1 156 36.5
CANSAT01G3222 Cannabis sativa HOM05D007874 ORTHO05D009614 2.0e-16 89.7 154 40.9
Dinv05171 Davidia involucrata HOM05D007874 ORTHO05D009614 1.3e-15 87.0 129 45.7
Hma1.2p1_0096F.1_g047930 Hydrangea macrophylla HOM05D007874 ORTHO05D009614 2.9e-15 85.9 160 36.9
PGR102G2496 Punica granatum HOM05D007874 ORTHO05D009614 6.5e-15 84.7 140 40.0
Sed0007191 Sechium edule HOM05D007874 ORTHO05D009614 5.5e-14 81.6 149 43.0
Glyma.07G216900 Glycine max HOM05D017162 ORTHO05D009614 7.2e-14 81.3 141 38.3
AT1G23050 Arabidopsis thaliana HOM05D007874 ORTHO05D009614 9.3e-14 80.9 150 41.3
THA.LOC104809191 Tarenaya hassleriana HOM05D007874 ORTHO05D009614 2.7e-13 79.3 111 42.3
BcaB05g24626 Brassica carinata HOM05D007874 ORTHO05D009614 3.6e-13 79.0 152 38.2
Potri.010G113100 Populus trichocarpa HOM05D007874 ORTHO05D009614 4.6e-13 78.6 135 45.9
EL10Ac6g14213 Beta vulgaris HOM05D007874 ORTHO05D009614 7.9e-13 77.8 140 38.6
CARHR064260 Cardamine hirsuta HOM05D007874 ORTHO05D009614 1.4e-12 77.0 134 38.1
MSTRG.901 Avicennia marina HOM05D007874 ORTHO05D009614 1.8e-12 76.6 146 38.4
BcaB03g14859 Brassica carinata HOM05D007874 ORTHO05D009614 3.0e-12 75.9 139 36.0
Cc11_g08720 Coffea canephora HOM05D007874 ORTHO05D009614 3.9e-12 75.5 140 37.9
Aa31LG4G10100 Aethionema arabicum HOM05D007874 ORTHO05D009614 1.9e-11 73.2 96 50.0
TWI75G1882 Tripterygium wilfordii HOM05D007874 ORTHO05D009614 1.9e-11 73.2 111 47.7
Nitab4.5_0002523g0020 Nicotiana tabacum HOM05D007874 ORTHO05D009614 3.3e-11 72.4 123 37.4
COL.COLO4_20481 Corchorus olitorius HOM05D007874 ORTHO05D009614 5.7e-11 71.6 72 56.9
AT1G70985 Arabidopsis thaliana HOM05D007874 ORTHO05D009614 2.2e-10 69.7 133 36.8
Lsat_1_v5_gn_3_54800 Lactuca sativa HOM05D007874 ORTHO05D009614 2.2e-10 69.7 104 44.2
Rhsim09G0067000 Rhododendron simsii HOM05D007874 ORTHO05D009614 2.2e-10 69.7 146 37.0
Eucgr.G02190 Eucalyptus grandis HOM05D007874 ORTHO05D009614 2.8e-10 69.3 118 42.4
Thhalv10019301m.g Eutrema salsugineum HOM05D007874 ORTHO05D009614 1.4e-09 67.0 152 35.5
C02p28490 Brassica napus HOM05D009085 ORTHO05D010299 3.1e-09 65.9 121 41.3
BolC2t08890H Brassica oleracea HOM05D009085 ORTHO05D010299 3.1e-09 65.9 121 41.3
Peaxi162Scf00137g00121 Petunia axillaris HOM05D007874 ORTHO05D009614 4.1e-09 65.5 149 32.9
DCAR_026776 Daucus carota HOM05D007874 ORTHO05D009614 5.3e-09 65.1 151 35.8
Nitab4.5_0000742g0160 Nicotiana tabacum HOM05D007874 ORTHO05D009614 5.3e-09 65.1 158 32.9
AL2G30530 Arabidopsis lyrata HOM05D007874 ORTHO05D009614 1.2e-08 63.9 124 38.7
Sp5g26130 Schrenkiella parvula HOM05D007874 ORTHO05D009614 1.2e-08 63.9 149 32.9
RcHm_v2.0_Chr4g0441281 Rosa chinensis HOM05D020194 ORTHO05D009614 2.0e-08 63.2 149 36.2
Lalb_Chr05g0219441 Lupinus albus HOM05D007874 ORTHO05D009614 2.6e-08 62.8 143 32.2
Prupe.1G324600 Prunus persica HOM05D007874 ORTHO05D009614 7.7e-08 61.2 153 38.6
Medtr4g084950 Medicago truncatula HOM05D017162 ORTHO05D009614 1.0e-07 60.8 91 46.2
FAN07G2552 Fragaria x ananassa HOM05D020194 ORTHO05D025497 1.7e-07 60.1 119 41.2
Carub.0001s2257 Capsella rubella HOM05D007874 ORTHO05D009614 2.9e-07 59.3 118 36.4
Gohir.A03G121800 Gossypium hirsutum HOM05D039765 ORTHO05D009614 2.9e-07 59.3 80 47.5
DCAR_030219 Daucus carota HOM05D007874 ORTHO05D009614 1.4e-06 57.0 144 36.1
A09p41670 Brassica napus HOM05D007874 ORTHO05D009614 1.9e-06 56.6 146 35.6
BraA09t39656Z Brassica rapa HOM05D007874 ORTHO05D009614 1.9e-06 56.6 146 35.6
Eucgr.B02901 Eucalyptus grandis HOM05D007874 ORTHO05D009614 2.5e-06 56.2 145 33.8
BcaC05g26216 Brassica carinata HOM05D007874 ORTHO05D009614 4.2e-06 55.5 130 37.7
BcaC06g35013 Brassica carinata HOM05D039980 ORTHO05D032147 4.2e-06 55.5 76 47.4
C05p22280 Brassica napus HOM05D007874 ORTHO05D009614 4.2e-06 55.5 130 37.7
C07p20680 Brassica napus HOM05D039980 ORTHO05D032147 4.2e-06 55.5 76 47.4
BolC5t30927H Brassica oleracea HOM05D007874 ORTHO05D009614 4.2e-06 55.5 130 37.7
BolC7t42602H Brassica oleracea HOM05D039980 ORTHO05D032147 4.2e-06 55.5 76 47.4
MELO3C005324.2 Cucumis melo HOM05D030674 ORTHO05D009614 5.5e-06 55.1 123 35.0


User provided reference genes

Program Settings