Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 3.7e-194 681.4 353 100.0
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.7e-176 622.1 349 92.8
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 6.5e-175 617.5 353 91.5
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 8.0e-173 610.5 353 90.9
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.0e-172 610.1 353 90.4
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 3.1e-161 572.0 353 86.1
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 2.3e-159 565.8 354 81.9
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.5e-158 563.1 349 82.5
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.9e-158 562.8 353 83.9
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 7.3e-158 560.8 353 82.2
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 1.8e-156 556.2 335 85.4
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.2e-155 553.5 353 81.6
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 2.0e-155 552.7 338 84.0
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 2.6e-155 552.4 353 81.6
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 3.4e-155 552.0 337 82.2
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 3.4e-155 552.0 353 79.9
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 2.2e-154 549.3 319 88.4
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.4e-153 546.6 338 81.1
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 4.1e-153 545.0 338 80.8
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 5.4e-153 544.7 353 79.3
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 9.2e-153 543.9 315 87.9
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.6e-152 543.1 338 82.8
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.6e-152 543.1 340 80.6
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 2.7e-152 542.3 338 81.4
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.0e-151 540.4 338 83.1
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.7e-151 539.7 335 81.2
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 1.7e-151 539.7 335 80.6
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 1.7e-151 539.7 338 82.0
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 2.3e-151 539.3 352 78.4
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 3.0e-151 538.9 300 92.3
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 3.0e-151 538.9 335 82.1
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 8.6e-151 537.3 338 81.7
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.9e-150 536.2 330 82.4
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.2e-149 533.5 350 78.6
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 3.6e-149 531.9 355 77.5
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 6.2e-149 531.2 410 70.0
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.0e-148 530.4 355 77.2
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.0e-148 530.4 345 80.0
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 3.1e-148 528.9 335 80.0
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 4.0e-148 528.5 354 77.1
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 8.9e-148 527.3 372 73.4
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 8.9e-148 527.3 356 77.8
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 1.2e-147 526.9 354 77.1
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.5e-147 526.6 343 79.0
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 2.6e-147 525.8 353 77.3
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 3.4e-147 525.4 353 77.1
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 3.4e-147 525.4 353 77.6
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.4e-147 525.4 345 79.1
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 4.4e-147 525.0 329 81.5
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 4.4e-147 525.0 340 78.5
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 4.4e-147 525.0 338 80.2
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 7.5e-147 524.2 354 76.6
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 2.2e-146 522.7 317 82.6
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 2.9e-146 522.3 335 79.7
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 2.9e-146 522.3 355 76.3
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 2.9e-146 522.3 355 76.3
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.9e-146 522.3 343 78.7
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 3.7e-146 521.9 348 78.2
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 4.9e-146 521.5 341 77.7
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 6.4e-146 521.2 341 77.7
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 8.3e-146 520.8 353 78.8
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 1.1e-145 520.4 333 79.6
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.4e-145 520.0 364 74.7
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 2.4e-145 519.2 355 75.8
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 2.4e-145 519.2 340 77.9
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 7.0e-145 517.7 355 75.5
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 7.0e-145 517.7 363 75.2
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 7.0e-145 517.7 335 79.4
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.6e-144 516.5 335 79.1
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 3.5e-144 515.4 336 80.4
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 3.5e-144 515.4 311 83.3
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 1.0e-143 513.8 335 77.0
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 6.6e-143 511.1 311 83.6
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.1e-142 510.4 353 74.8
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 4.3e-142 508.4 317 81.1
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 9.5e-142 507.3 311 82.3
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.1e-141 506.1 320 82.8
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 4.0e-140 501.9 320 82.2
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 1.3e-138 496.9 313 80.8
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 3.5e-136 488.8 323 75.5
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.3e-135 486.9 353 73.7
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 2.5e-134 482.6 331 74.6
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 3.6e-133 478.8 341 70.1
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 1.4e-132 476.9 307 80.1
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 2.0e-131 473.0 307 80.5
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 1.3e-130 470.3 335 74.6
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 3.8e-130 468.8 287 83.3
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.1e-129 467.2 305 78.4
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.4e-129 466.8 358 70.9
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 5.4e-129 464.9 330 75.5
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 2.7e-128 462.6 311 78.1
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.9e-127 458.8 392 65.3
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 5.8e-123 444.9 314 71.3
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 2.1e-120 436.4 340 70.6
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 3.5e-120 435.6 323 71.5
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.5e-118 430.3 280 77.1
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.4e-116 423.7 338 66.3
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 3.4e-115 419.1 347 65.1
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 3.8e-114 415.6 325 65.5
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 4.9e-114 415.2 316 67.4
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 5.6e-110 401.7 242 85.5
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 1.5e-107 393.7 334 62.9
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 8.4e-106 387.9 255 75.3
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 6.5e-98 361.7 221 81.0
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.3e-95 354.0 217 79.3
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 8.7e-87 324.7 303 56.4
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.2e-83 314.3 230 68.3
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.3e-82 310.8 192 82.8
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 4.2e-81 305.8 307 54.7
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.4e-79 300.8 187 81.8
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 2.3e-79 300.1 308 56.2
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 4.1e-76 289.3 220 68.6
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 3.2e-73 279.6 229 63.8
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 4.2e-73 279.3 167 86.8
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 3.0e-63 246.5 340 45.3
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.4e-60 237.7 151 78.8
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.9e-59 232.3 286 49.0
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 5.2e-55 219.2 160 71.2
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 8.0e-48 195.3 162 65.4
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 5.2e-47 192.6 243 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.6e-38 163.7 163 54.6
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 5.7e-38 162.5 276 35.5
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.7e-37 161.0 265 41.1
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 2.9e-37 160.2 259 40.9
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 8.3e-37 158.7 117 66.7
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.8e-36 157.5 110 69.1
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.5e-33 147.9 80 88.8
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 9.5e-33 145.2 243 44.4
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 9.8e-30 135.2 101 72.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.0e-26 125.2 81 79.0
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 2.0e-22 110.9 74 70.3
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.6e-22 110.5 109 56.0
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 9.2e-20 102.1 54 87.0
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.6e-19 99.8 113 51.3
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.3e-18 97.4 88 63.6
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.1e-18 96.3 60 83.3
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.1e-18 96.3 59 86.4
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 4.7e-16 89.7 62 69.4
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 4.4e-14 83.2 55 70.9
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.2e-11 75.1 43 81.4
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 9.0e-07 58.9 34 79.4
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.5e-06 58.2 76 47.4


User provided reference genes

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