Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G280000 Theobroma cacao HOM05D007719 ORTHO05D009782 3.3e-164 581.6 295 100.0
Gorai.008G166400 Gossypium raimondii HOM05D007719 ORTHO05D009782 3.2e-135 485.3 278 88.8
Gohir.A12G150300 Gossypium hirsutum HOM05D007719 ORTHO05D009782 9.4e-135 483.8 278 88.8
Gohir.D12G153900 Gossypium hirsutum HOM05D007719 ORTHO05D009782 1.2e-134 483.4 277 88.8
COL.COLO4_20469 Corchorus olitorius HOM05D007719 ORTHO05D009782 2.7e-134 482.3 302 83.1
MD16G1029600 Malus domestica HOM05D007719 ORTHO05D009782 8.6e-120 434.1 265 81.5
Atru.chr11.428 Acer truncatum HOM05D007719 ORTHO05D009782 2.8e-118 429.1 279 76.0
Potri.010G114100 Populus trichocarpa HOM05D007719 ORTHO05D009782 8.0e-118 427.6 277 78.3
FvH4_4g32280 Fragaria vesca HOM05D007719 ORTHO05D009782 2.0e-116 422.9 259 79.5
FAN12G3181 Fragaria x ananassa HOM05D007719 ORTHO05D009782 2.0e-116 422.9 259 79.5
Prupe.1G323300 Prunus persica HOM05D007719 ORTHO05D009782 3.4e-116 422.2 266 79.3
FAN22G2057 Fragaria x ananassa HOM05D007719 ORTHO05D009782 1.7e-115 419.9 259 78.4
PGR119G0428 Punica granatum HOM05D007719 ORTHO05D009782 1.7e-115 419.9 276 78.6
Lalb_Chr17g0338681 Lupinus albus HOM05D007719 ORTHO05D009782 2.8e-115 419.1 260 80.0
Cpa.g.sc65.124 Carica papaya HOM05D007719 ORTHO05D009782 4.9e-115 418.3 273 77.3
Dinv05161 Davidia involucrata HOM05D007719 ORTHO05D009782 1.4e-114 416.8 269 77.3
Medtr1g030640 Medicago truncatula HOM05D007719 ORTHO05D009782 1.8e-114 416.4 264 76.9
VMungo1215G2618 Vigna mungo HOM05D007719 ORTHO05D009782 5.4e-114 414.8 248 80.2
TPR.G36961 Trifolium pratense HOM05D007719 ORTHO05D009782 7.0e-114 414.5 270 74.4
QL01p001957 Quercus lobata HOM05D007719 ORTHO05D009782 1.6e-113 413.3 257 78.6
TAR629G1042 Trochodendron aralioides HOM05D007719 ORTHO05D009782 2.0e-113 412.9 256 80.1
Psat0s3407g0080 Pisum sativum HOM05D007719 ORTHO05D009782 2.7e-113 412.5 246 80.5
RcHm_v2.0_Chr4g0441071 Rosa chinensis HOM05D007719 ORTHO05D009782 3.5e-113 412.1 257 79.0
FAN07G1524 Fragaria x ananassa HOM05D007719 ORTHO05D009782 7.8e-113 411.0 287 71.4
Glyma.09G119300 Glycine max HOM05D007719 ORTHO05D009782 1.3e-112 410.2 269 75.8
Ca_25710_v3 Cicer arietinum L. HOM05D007719 ORTHO05D009782 1.7e-112 409.8 268 76.1
Lj2g0007830 Lotus japonicus HOM05D007719 ORTHO05D009782 2.3e-112 409.5 235 83.4
TWI75G0056 Tripterygium wilfordii HOM05D007719 ORTHO05D009782 5.0e-112 408.3 259 77.6
ECA234G0976 Erigeron canadensis HOM05D007719 ORTHO05D009782 6.6e-112 407.9 245 80.0
Phvul.003G022800 Phaseolus vulgaris HOM05D007719 ORTHO05D009782 6.6e-112 407.9 264 76.1
CiPaw.05G248600 Carya illinoinensis HOM05D007719 ORTHO05D009782 1.9e-111 406.4 274 75.5
Actinidia36679 Actinidia chinensis HOM05D007719 ORTHO05D009782 2.5e-111 406.0 280 73.9
arahy.Tifrunner.gnm1.ann1.Y8VIVB Arachis hypogaea HOM05D007719 ORTHO05D009782 2.5e-111 406.0 262 75.2
arahy.Tifrunner.gnm1.ann1.L198GP Arachis hypogaea HOM05D007719 ORTHO05D009782 5.6e-111 404.8 262 74.8
CSS0046068 Camellia sinensis var. sinensis HOM05D007719 ORTHO05D009782 7.3e-111 404.4 245 78.8
Hund24987 Selenicereus undatus HOM05D007719 ORTHO05D009782 7.3e-111 404.4 280 73.2
AUR62002606 Chenopodium quinoa HOM05D007719 ORTHO05D009782 2.8e-110 402.5 249 79.5
AUR62030024 Chenopodium quinoa HOM05D007719 ORTHO05D009782 4.7e-110 401.7 236 82.2
Lsat_1_v5_gn_4_14941 Lactuca sativa HOM05D007719 ORTHO05D009782 4.7e-110 401.7 248 79.0
vmacro10633 Vaccinium macrocarpon HOM05D007719 ORTHO05D009782 6.1e-110 401.4 258 77.1
ATR0686G226 Amborella trichopoda HOM05D007719 ORTHO05D009782 1.4e-109 400.2 265 75.1
Sed0008286 Sechium edule HOM05D007719 ORTHO05D009782 3.1e-109 399.1 265 74.7
CsaV3_5G028560 Cucumis sativus L. HOM05D007719 ORTHO05D009782 8.9e-109 397.5 259 76.8
ClCG01G006100 Citrullus lanatus HOM05D007719 ORTHO05D009782 2.0e-108 396.4 264 75.0
HanXRQChr17g0566951 Helianthus annuus HOM05D007719 ORTHO05D009782 4.4e-108 395.2 245 79.2
Manes.15G114900 Manihot esculenta HOM05D007719 ORTHO05D009782 4.4e-108 395.2 226 85.4
Sc11g0004120 Simmondsia chinensis HOM05D007719 ORTHO05D009782 9.8e-108 394.0 278 71.9
EL10Ac3g06304 Beta vulgaris HOM05D007719 ORTHO05D009782 1.3e-107 393.7 239 79.9
Sabra10G0084100 Salix brachista HOM05D007719 ORTHO05D009782 2.9e-107 392.5 294 70.1
Rhsim09G0099000 Rhododendron simsii HOM05D007719 ORTHO05D009782 3.7e-107 392.1 256 76.6
Eucgr.G02196 Eucalyptus grandis HOM05D007719 ORTHO05D009782 8.3e-107 391.0 233 80.7
FAN17G2178 Fragaria x ananassa HOM05D007719 ORTHO05D009782 1.1e-106 390.6 226 82.7
Sopen05g004110 Solanum pennellii HOM05D007719 ORTHO05D009782 1.1e-106 390.6 276 72.8
CAN.G1334.8 Capsicum annuum HOM05D007719 ORTHO05D009782 2.4e-106 389.4 277 71.8
PGSC0003DMG400030550 Solanum tuberosum HOM05D007719 ORTHO05D009782 3.2e-106 389.0 276 72.1
Haze_11019 Corylus avellana HOM05D007719 ORTHO05D009782 1.2e-105 387.1 314 65.6
Solyc05g008270.3 Solanum lycopersicum HOM05D007719 ORTHO05D009782 2.0e-105 386.3 276 72.1
MSTRG.23215 Avicennia marina HOM05D007719 ORTHO05D009782 3.5e-105 385.6 268 73.5
Cc11_g08840 Coffea canephora HOM05D007719 ORTHO05D009782 4.6e-105 385.2 236 78.4
Nitab4.5_0004776g0060 Nicotiana tabacum HOM05D007719 ORTHO05D009782 1.0e-104 384.0 237 78.5
SEGI_18275 Sequoiadendron giganteum HOM05D007719 ORTHO05D009782 1.0e-104 384.0 233 79.4
MELO3C005317.2 Cucumis melo HOM05D007719 ORTHO05D009782 1.3e-104 383.6 268 72.8
SalBow5G1767 Salvia bowleyana HOM05D007719 ORTHO05D009782 2.5e-103 379.4 259 74.5
HPP92_021852 Vanilla planifolia HOM05D007719 ORTHO05D009782 2.5e-103 379.4 248 73.4
Ah.07g204110 Amaranthus hybridus HOM05D007719 ORTHO05D009782 5.6e-103 378.3 257 73.9
DCAR_030215 Daucus carota HOM05D007719 ORTHO05D009782 1.6e-102 376.7 226 81.0
Migut.O00274 Erythranthe guttata HOM05D007719 ORTHO05D009782 3.1e-101 372.5 257 73.2
Oeu034423.3 Olea europaea HOM05D007719 ORTHO05D009782 3.1e-101 372.5 261 72.0
unitig_61.g26194 Utricularia gibba HOM05D007719 ORTHO05D009782 6.4e-99 364.8 243 73.7
Pp3c1_3200 Physcomitrium patens HOM05D007719 ORTHO05D009782 2.4e-98 362.8 233 74.7
Actinidia15254 Actinidia chinensis HOM05D007719 ORTHO05D009782 3.5e-97 359.0 307 63.5
Os01g0127400 Oryza sativa ssp. japonica HOM05D007719 ORTHO05D009782 7.8e-97 357.8 279 65.2
Mapoly0070s0076 Marchantia polymorpha HOM05D007719 ORTHO05D009782 3.3e-95 352.4 233 70.0
SGA_v2.0_scaffold25G10737 Striga asiatica HOM05D007719 ORTHO05D009782 3.3e-95 352.4 287 65.9
Cfa008596 Carpinus fangiana HOM05D007719 ORTHO05D009782 1.2e-94 350.5 249 70.3
Peaxi162Scf00205g00122 Petunia axillaris HOM05D007719 ORTHO05D009782 4.4e-92 342.0 279 65.9
Duzib268G0649 Durio zibethinus HOM05D007719 ORTHO05D009782 1.1e-90 337.4 247 73.3
SMO236G0033 Selaginella moellendorffii HOM05D007719 ORTHO05D009782 1.4e-90 337.0 232 70.7
SMO236G0110 Selaginella moellendorffii HOM05D007719 ORTHO05D009782 1.4e-90 337.0 232 70.7
GSVIVG01011772001 Vitis vinifera HOM05D007719 ORTHO05D009782 5.6e-87 325.1 218 76.6
CDE04G3405 Ceratophyllum demersum HOM05D007719 ORTHO05D009782 7.1e-82 308.1 232 70.3
Nn4g24120 Nelumbo nucifera HOM05D007719 ORTHO05D009782 8.7e-80 301.2 174 81.6
Zm00001eb125300 Zea mays HOM05D007719 ORTHO05D009782 4.4e-76 288.9 200 70.5
CBR_g12440 Chara braunii HOM05D007719 ORTHO05D009782 1.1e-66 257.7 247 53.8
SMO187G0003 Selaginella moellendorffii HOM05D007719 ORTHO05D009782 2.1e-65 253.4 232 57.3
GSVIVG01011775001 Vitis vinifera HOM05D007719 ORTHO05D009782 1.3e-59 234.2 145 78.6
AagrBONN_evm.TU.Sc2ySwM_228.3777 Anthoceros agrestis HOM05D007719 ORTHO05D009782 6.0e-57 225.3 151 74.2
SEGI_23314 Sequoiadendron giganteum HOM05D007719 ORTHO05D009782 1.0e-40 171.4 114 73.7
TPR.G29132 Trifolium pratense HOM05D007719 ORTHO05D009782 1.1e-10 71.6 77 51.9
PGR004G0179 Punica granatum HOM05D007226 ORTHO05D009160 1.7e-06 57.8 96 47.9


User provided reference genes

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