Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G279500 Theobroma cacao HOM05D002881 ORTHO05D010329 4.2e-186 654.4 311 100.0
Thecc.06G098800 Theobroma cacao HOM05D002881 ORTHO05D010329 1.1e-141 506.9 365 68.8
Thecc.10G137400 Theobroma cacao HOM05D002881 ORTHO05D002983 1.0e-139 500.4 391 64.7
Thecc.05G210100 Theobroma cacao HOM05D002881 ORTHO05D002983 1.3e-113 413.7 391 57.0
Thecc.03G121800 Theobroma cacao HOM05D002881 ORTHO05D002983 9.7e-98 360.9 333 58.6
Thecc.10G091900 Theobroma cacao HOM05D002881 ORTHO05D010329 8.8e-91 337.8 240 63.8
Thecc.02G249500 Theobroma cacao HOM05D002881 ORTHO05D010329 1.1e-85 320.9 214 72.4
Thecc.02G286200 Theobroma cacao HOM05D002881 ORTHO05D002983 2.6e-74 283.1 339 45.1
Thecc.04G051200 Theobroma cacao HOM05D002881 ORTHO05D002983 3.9e-62 242.7 388 36.1
Thecc.08G197700 Theobroma cacao HOM05D002881 ORTHO05D010329 8.6e-46 188.3 206 47.6
Gorai.002G202700 Gossypium raimondii HOM05D002881 ORTHO05D002983 1.2e-44 184.5 241 36.1
Thecc.05G072600 Theobroma cacao HOM05D002881 ORTHO05D002983 4.0e-43 179.5 388 30.7
Duzib235G1144 Durio zibethinus HOM05D002881 ORTHO05D002983 3.7e-41 172.9 330 32.7
TWI56G0801 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 3.2e-40 169.9 258 36.8
Gohir.D13G093150 Gossypium hirsutum HOM05D002881 ORTHO05D002983 1.2e-39 167.9 220 38.2
Thecc.03G050000 Theobroma cacao HOM05D002881 ORTHO05D010329 1.1e-37 161.4 86 84.9
TWI23G0459 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 3.3e-37 159.8 255 35.7
Sed0006040 Sechium edule HOM05D002881 ORTHO05D010329 9.9e-34 148.3 254 30.7
COL.COLO4_20929 Corchorus olitorius HOM05D002881 ORTHO05D002983 5.4e-32 142.5 200 38.5
Gorai.010G160500 Gossypium raimondii HOM05D002881 ORTHO05D002983 3.3e-29 133.3 212 34.9
Thecc.07G191800 Theobroma cacao HOM05D002881 ORTHO05D002983 2.1e-28 130.6 216 35.2
Gohir.D01G148150 Gossypium hirsutum HOM05D002881 ORTHO05D002983 3.6e-28 129.8 191 37.2
TWI56G1458 Tripterygium wilfordii HOM05D036929 ORTHO05D010329 4.8e-28 129.4 232 31.9
COL.COLO4_04691 Corchorus olitorius HOM05D002881 ORTHO05D002983 2.4e-27 127.1 153 41.8
Potri.T002768 Populus trichocarpa HOM05D002881 ORTHO05D002983 1.5e-26 124.4 232 33.2
TWI53G0826 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 5.8e-26 122.5 237 31.2
Gohir.A04G057152 Gossypium hirsutum HOM05D002881 ORTHO05D002983 2.9e-25 120.2 221 31.7
Duzib151G1070 Durio zibethinus HOM05D002881 ORTHO05D002983 2.3e-22 110.5 188 36.7
Gorai.001G080800 Gossypium raimondii HOM05D002881 ORTHO05D002983 1.9e-21 107.5 173 33.5
COL.COLO4_21258 Corchorus olitorius HOM05D011887 ORTHO05D010329 2.8e-20 103.6 186 30.6
Thecc.02G226000 Theobroma cacao HOM05D002881 ORTHO05D002983 1.1e-19 101.7 61 75.4
Thecc.08G178300 Theobroma cacao HOM05D002881 ORTHO05D002983 1.1e-19 101.7 116 48.3
COL.COLO4_37634 Corchorus olitorius HOM05D035067 ORTHO05D010329 5.8e-18 95.9 114 38.6
Gohir.D12G068401 Gossypium hirsutum HOM05D002881 ORTHO05D002983 5.8e-18 95.9 207 30.0
MELO3C025327.2 Cucumis melo HOM05D002881 ORTHO05D002983 2.2e-17 94.0 179 31.8
MELO3C031109.2 Cucumis melo HOM05D002881 ORTHO05D002983 1.1e-16 91.7 178 30.3
MELO3C027170.2 Cucumis melo HOM05D005793 ORTHO05D010329 2.1e-15 87.4 82 43.9
COL.COLO4_08519 Corchorus olitorius HOM05D035067 ORTHO05D010329 3.5e-15 86.7 114 36.0
MELO3C013661.2 Cucumis melo HOM05D005793 ORTHO05D010329 3.5e-15 86.7 93 40.9
Sopen05g014510 Solanum pennellii HOM05D002047 ORTHO05D001422 3.0e-14 83.6 166 30.7
Sopen02g007640 Solanum pennellii HOM05D002047 ORTHO05D001422 3.9e-14 83.2 166 30.1
Sopen11g019410 Solanum pennellii HOM05D002047 ORTHO05D001422 3.9e-14 83.2 166 30.1
TWI79G0344 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 5.1e-14 82.8 120 33.3
CAN.G82.5 Capsicum annuum HOM05D025468 ORTHO05D019542 6.7e-14 82.4 86 41.9
MELO3C027262.2 Cucumis melo HOM05D005793 ORTHO05D010329 6.7e-14 82.4 82 42.7
Sopen04g022160 Solanum pennellii HOM05D002047 ORTHO05D001422 4.3e-13 79.7 249 25.7
MELO3C033709.2 Cucumis melo HOM05D005793 ORTHO05D010329 5.6e-13 79.3 75 45.3
Medtr6g072130 Medicago truncatula HOM05D002881 ORTHO05D002983 5.6e-13 79.3 255 22.7
Sopen11g020140 Solanum pennellii HOM05D002047 ORTHO05D001422 5.6e-13 79.3 166 29.5
Sopen05g013180 Solanum pennellii HOM05D002047 ORTHO05D001422 9.6e-13 78.6 166 29.5
MELO3C027563.2 Cucumis melo HOM05D005793 ORTHO05D010329 1.3e-12 78.2 82 41.5
PGSC0003DMG400016492 Solanum tuberosum HOM05D002047 ORTHO05D001422 1.3e-12 78.2 163 27.0
MELO3C027473.2 Cucumis melo HOM05D005793 ORTHO05D010329 2.8e-12 77.0 82 41.5
CAN.G1.9 Capsicum annuum HOM05D025468 ORTHO05D019542 3.7e-12 76.6 87 37.9
Medtr4g009470 Medicago truncatula HOM05D002881 ORTHO05D002983 3.7e-12 76.6 247 24.3
Medtr5g084310 Medicago truncatula HOM05D002881 ORTHO05D002983 3.7e-12 76.6 224 24.6
Medtr5g085650 Medicago truncatula HOM05D002881 ORTHO05D002983 3.7e-12 76.6 224 24.6
TPR.G23480 Trifolium pratense HOM05D002881 ORTHO05D002983 3.7e-12 76.6 212 25.5
Medtr1g018990 Medicago truncatula HOM05D002881 ORTHO05D002983 4.8e-12 76.3 224 25.0
Medtr3g082580 Medicago truncatula HOM05D002881 ORTHO05D002983 4.8e-12 76.3 224 25.0
Medtr7g079940 Medicago truncatula HOM05D002881 ORTHO05D002983 4.8e-12 76.3 224 25.0
Medtr5g028560 Medicago truncatula HOM05D002881 ORTHO05D002983 6.2e-12 75.9 224 25.0
Medtr5g040810 Medicago truncatula HOM05D002881 ORTHO05D002983 6.2e-12 75.9 224 25.0
Medtr6g027000 Medicago truncatula HOM05D002881 ORTHO05D002983 6.2e-12 75.9 224 25.0
Medtr7g028120 Medicago truncatula HOM05D002881 ORTHO05D002983 6.2e-12 75.9 224 25.0
Medtr1g036610 Medicago truncatula HOM05D002881 ORTHO05D002983 8.1e-12 75.5 247 23.9
Medtr3g047220 Medicago truncatula HOM05D002881 ORTHO05D002983 8.1e-12 75.5 247 24.3
Medtr3g051650 Medicago truncatula HOM05D002881 ORTHO05D002983 8.1e-12 75.5 270 23.3
Medtr6g471550 Medicago truncatula HOM05D002881 ORTHO05D002983 8.1e-12 75.5 247 23.5
Sopen01g024220 Solanum pennellii HOM05D007487 ORTHO05D008561 8.1e-12 75.5 171 30.4
MELO3C000665.2 Cucumis melo HOM05D002881 ORTHO05D002983 1.1e-11 75.1 115 34.8
Medtr0029s0060 Medicago truncatula HOM05D002881 ORTHO05D002983 1.4e-11 74.7 224 24.6
Medtr3g100770 Medicago truncatula HOM05D002881 ORTHO05D002983 1.4e-11 74.7 224 24.6
Medtr5g036210 Medicago truncatula HOM05D002881 ORTHO05D002983 1.4e-11 74.7 224 24.6
Medtr5g074255 Medicago truncatula HOM05D002881 ORTHO05D002983 1.4e-11 74.7 262 23.7
Medtr7g077015 Medicago truncatula HOM05D002881 ORTHO05D002983 1.4e-11 74.7 247 23.9
Sopen05g014240 Solanum pennellii HOM05D000014 ORTHO05D000016 1.8e-11 74.3 206 23.8
Medtr5g015640 Medicago truncatula HOM05D002881 ORTHO05D002983 2.4e-11 73.9 224 25.0
Medtr7g006680 Medicago truncatula HOM05D002881 ORTHO05D002983 2.4e-11 73.9 270 23.3
Medtr7g046110 Medicago truncatula HOM05D002881 ORTHO05D002983 2.4e-11 73.9 270 23.3
Thecc.07G158600 Theobroma cacao HOM05D002881 ORTHO05D002983 2.4e-11 73.9 150 30.0
Medtr2g049380 Medicago truncatula HOM05D002881 ORTHO05D002983 3.1e-11 73.6 191 28.3
Medtr3g091160 Medicago truncatula HOM05D002881 ORTHO05D002983 3.1e-11 73.6 270 23.3
Sopen01g017450 Solanum pennellii HOM05D002047 ORTHO05D001422 3.1e-11 73.6 205 23.9
COL.COLO4_04350 Corchorus olitorius HOM05D002881 ORTHO05D002983 5.3e-11 72.8 60 55.0
Medtr3g013580 Medicago truncatula HOM05D002881 ORTHO05D002983 5.3e-11 72.8 270 23.7
Medtr5g080530 Medicago truncatula HOM05D002881 ORTHO05D002983 5.3e-11 72.8 270 23.0
Medtr3g023410 Medicago truncatula HOM05D002881 ORTHO05D002983 1.5e-10 71.2 212 24.1
Sopen01g005990 Solanum pennellii HOM05D002047 ORTHO05D001422 1.5e-10 71.2 172 26.7
MELO3C031989.2 Cucumis melo HOM05D005793 ORTHO05D010329 2.0e-10 70.9 62 45.2
Duzib174G0003 Durio zibethinus HOM05D000071 ORTHO05D000029 4.5e-10 69.7 77 42.9
Medtr0866s0010 Medicago truncatula HOM05D002881 ORTHO05D002983 4.5e-10 69.7 190 25.8
Medtr3g047715 Medicago truncatula HOM05D002881 ORTHO05D002983 4.5e-10 69.7 248 26.2
Sopen00g005910 Solanum pennellii HOM05D002047 ORTHO05D001422 4.5e-10 69.7 164 24.4
Sopen09g022420 Solanum pennellii HOM05D002047 ORTHO05D001422 4.5e-10 69.7 175 27.4
TAR275G0001 Trochodendron aralioides HOM05D032489 ORTHO05D001786 4.5e-10 69.7 180 27.2
Sopen03g025980 Solanum pennellii HOM05D010031 ORTHO05D012898 7.6e-10 68.9 166 30.1
Medtr6g061790 Medicago truncatula HOM05D002881 ORTHO05D002983 1.0e-09 68.6 212 24.1
TPR.G35764 Trifolium pratense HOM05D002881 ORTHO05D002983 1.0e-09 68.6 236 26.3
MELO3C033174.2 Cucumis melo HOM05D005793 ORTHO05D010329 2.2e-09 67.4 72 40.3
MELO3C034245.2 Cucumis melo HOM05D002881 ORTHO05D002983 2.9e-09 67.0 115 33.9
Sopen01g024350 Solanum pennellii HOM05D000004 ORTHO05D001422 2.9e-09 67.0 183 21.9
Sopen08g007700 Solanum pennellii HOM05D000004 ORTHO05D000002 3.8e-09 66.6 183 25.1
MELO3C004088.2 Cucumis melo HOM05D005793 ORTHO05D010329 4.9e-09 66.2 72 38.9
MELO3C028745.2 Cucumis melo HOM05D002881 ORTHO05D002983 4.9e-09 66.2 153 30.1
Sopen01g005980 Solanum pennellii HOM05D002047 ORTHO05D001422 4.9e-09 66.2 151 27.8
Sopen05g025210 Solanum pennellii HOM05D007487 ORTHO05D008561 1.1e-08 65.1 166 28.3
TPR.G18565 Trifolium pratense HOM05D002881 ORTHO05D002983 1.1e-08 65.1 200 28.5
MELO3C034108.2 Cucumis melo HOM05D005793 ORTHO05D010329 1.9e-08 64.3 55 45.5
MELO3C032534.2 Cucumis melo HOM05D005793 ORTHO05D010329 2.5e-08 63.9 72 36.1
Sopen01g006870 Solanum pennellii HOM05D002047 ORTHO05D001422 3.2e-08 63.5 212 23.6
Sopen03g015690 Solanum pennellii HOM05D008695 ORTHO05D001422 3.2e-08 63.5 219 25.6
MELO3C032973.2 Cucumis melo HOM05D005793 ORTHO05D010329 4.2e-08 63.2 72 37.5
Medtr0014s0420 Medicago truncatula HOM05D002881 ORTHO05D002983 4.2e-08 63.2 248 25.0
TPR.G18606 Trifolium pratense HOM05D002881 ORTHO05D002983 5.5e-08 62.8 214 24.8
Ca_19521_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 7.1e-08 62.4 153 27.5
MELO3C029856.2 Cucumis melo HOM05D005793 ORTHO05D010329 7.1e-08 62.4 72 36.1
MELO3C031787.2 Cucumis melo HOM05D005793 ORTHO05D010329 7.1e-08 62.4 55 43.6
MELO3C027464.2 Cucumis melo HOM05D005793 ORTHO05D010329 9.3e-08 62.0 62 43.5
Sopen01g020100 Solanum pennellii HOM05D007487 ORTHO05D008561 9.3e-08 62.0 173 27.2
Ca_07212_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 1.2e-07 61.6 165 27.3
Medtr3g452070 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-07 61.6 198 26.3
arahy.Tifrunner.gnm1.ann1.4DCC2L Arachis hypogaea HOM05D036929 ORTHO05D010329 2.1e-07 60.8 71 40.8
MELO3C034156.2 Cucumis melo HOM05D005793 ORTHO05D010329 2.7e-07 60.5 61 41.0
MELO3C027523.2 Cucumis melo HOM05D005793 ORTHO05D010329 3.5e-07 60.1 56 44.6
MELO3C033588.2 Cucumis melo HOM05D005793 ORTHO05D010329 3.5e-07 60.1 75 36.0
Medtr6g084020 Medicago truncatula HOM05D002881 ORTHO05D002983 4.6e-07 59.7 216 23.1
MELO3C033144.2 Cucumis melo HOM05D005793 ORTHO05D010329 6.0e-07 59.3 90 37.8
Dinv11092 Davidia involucrata HOM05D012821 ORTHO05D001422 7.9e-07 58.9 163 24.5
PGSC0003DMG400027483 Solanum tuberosum HOM05D009746 ORTHO05D008561 7.9e-07 58.9 184 27.2
CsaV3_5G027550 Cucumis sativus L. HOM05D005793 ORTHO05D010329 1.0e-06 58.5 80 27.5
TPR.G18491 Trifolium pratense HOM05D002881 ORTHO05D002983 2.3e-06 57.4 169 24.9
Gorai.002G055600 Gossypium raimondii HOM05D002881 ORTHO05D002983 3.9e-06 56.6 97 34.0
Sopen03g019350 Solanum pennellii HOM05D002047 ORTHO05D001422 3.9e-06 56.6 94 28.7
Sopen08g013060 Solanum pennellii HOM05D002047 ORTHO05D001422 3.9e-06 56.6 94 28.7
Medtr3g020590 Medicago truncatula HOM05D002881 ORTHO05D002983 5.1e-06 56.2 183 24.0
Sopen02g012430 Solanum pennellii HOM05D002047 ORTHO05D001422 5.1e-06 56.2 94 27.7
Medtr5g081070 Medicago truncatula HOM05D002881 ORTHO05D002983 6.7e-06 55.8 200 25.5
Sopen06g007040 Solanum pennellii HOM05D002047 ORTHO05D001422 6.7e-06 55.8 157 22.9
Sopen08g008690 Solanum pennellii HOM05D000002 ORTHO05D000001 6.7e-06 55.8 94 29.8
TWI34G2007 Tripterygium wilfordii HOM05D000047 ORTHO05D000044 6.7e-06 55.8 60 40.0
Lalb_Chr10g0094031 Lupinus albus HOM05D064032 ORTHO05D002983 8.7e-06 55.5 125 29.6
Sopen05g012170 Solanum pennellii HOM05D002047 ORTHO05D001422 8.7e-06 55.5 157 23.6
TPR.G35157 Trifolium pratense HOM05D002881 ORTHO05D000589 8.7e-06 55.5 205 24.4


User provided reference genes

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