Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 5.7e-184 647.5 339 100.0
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 1.4e-86 323.9 304 62.2
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 2.5e-62 243.4 319 45.5
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 6.1e-53 212.2 313 44.4
Gorai.005G169600 Gossypium raimondii HOM05D007857 ORTHO05D009355 3.3e-51 206.5 184 59.2
Gohir.D02G151200 Gossypium hirsutum HOM05D007857 ORTHO05D009355 5.7e-51 205.7 184 58.7
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 7.4e-51 205.3 311 41.5
Gohir.A03G127600 Gossypium hirsutum HOM05D007857 ORTHO05D009355 3.7e-50 203.0 184 57.1
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 1.1e-49 201.4 308 45.8
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 7.7e-48 195.3 247 48.2
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 7.7e-48 195.3 247 48.2
Ciclev10033758m.g Citrus clementina HOM05D007857 ORTHO05D009355 2.2e-47 193.7 331 39.3
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 1.4e-46 191.0 229 48.0
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 4.2e-46 189.5 234 47.4
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 9.4e-46 188.3 300 39.7
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 1.6e-45 187.6 171 54.4
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 3.9e-44 183.0 295 43.1
CANSAT01G1499 Cannabis sativa HOM05D007857 ORTHO05D009355 1.1e-43 181.4 288 37.8
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 5.7e-43 179.1 327 36.1
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 2.2e-42 177.2 311 39.9
Lj4g0021592 Lotus japonicus HOM05D007857 ORTHO05D009355 3.7e-42 176.4 312 38.5
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 4.8e-42 176.0 226 46.9
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 1.2e-40 171.4 335 37.9
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 1.0e-39 168.3 309 37.9
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 1.3e-39 167.9 320 39.1
Oeu020304.1 Olea europaea HOM05D001334 ORTHO05D001119 2.9e-39 166.8 292 38.4
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 1.5e-38 164.5 279 41.2
Phvul.002G175100 Phaseolus vulgaris HOM05D007857 ORTHO05D009355 1.2e-37 161.4 287 39.7
Sed0017756 Sechium edule HOM05D007857 ORTHO05D009355 1.4e-36 157.9 300 34.7
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 2.3e-36 157.1 286 38.5
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 1.5e-35 154.5 316 37.3
ClCG08G017230 Citrullus lanatus HOM05D007857 ORTHO05D009355 2.0e-35 154.1 349 33.8
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 4.4e-35 152.9 240 42.5
TAR622G0135 Trochodendron aralioides HOM05D007857 ORTHO05D009355 9.7e-35 151.8 302 38.1
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 3.7e-34 149.8 238 39.1
MELO3C010736.2 Cucumis melo HOM05D007857 ORTHO05D009355 4.8e-34 149.4 376 32.7
Sed0006532 Sechium edule HOM05D007857 ORTHO05D009355 4.8e-34 149.4 269 37.5
CsaV3_2G025390 Cucumis sativus L. HOM05D007857 ORTHO05D009355 1.8e-33 147.5 233 38.2
Manes.13G017400 Manihot esculenta HOM05D007857 ORTHO05D009355 2.4e-33 147.1 178 46.1
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 3.1e-33 146.7 301 37.2
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 7.0e-33 145.6 295 36.6
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 9.1e-33 145.2 311 34.1
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 1.2e-32 144.8 304 37.2
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 1.6e-32 144.4 344 33.7
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 2.7e-32 143.7 319 35.1
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 7.7e-32 142.1 295 35.9
Glyma.03G186400 Glycine max HOM05D007857 ORTHO05D009355 1.7e-31 141.0 250 41.2
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 2.9e-31 140.2 300 38.0
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 5.0e-31 139.4 299 35.8
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 5.0e-31 139.4 344 33.7
TPR.G17074 Trifolium pratense HOM05D007857 ORTHO05D009355 1.1e-30 138.3 292 36.3
Medtr8g080270 Medicago truncatula HOM05D007857 ORTHO05D009355 1.9e-30 137.5 310 34.5
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 1.2e-29 134.8 298 34.2
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 2.7e-29 133.7 284 33.1
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 2.7e-29 133.7 164 43.9
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 3.6e-29 133.3 286 33.9
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 8.0e-29 132.1 306 36.9
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 5.2e-28 129.4 304 36.8
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 5.2e-28 129.4 304 36.8
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 1.2e-27 128.3 260 36.2
DCAR_031188 Daucus carota HOM05D007857 ORTHO05D009355 2.6e-27 127.1 290 32.4
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 5.7e-27 125.9 193 40.4
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 1.3e-26 124.8 333 30.6
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 1.7e-26 124.4 164 46.3
MBI11_g31349_MAGBIO Magnolia biondii HOM05D007857 ORTHO05D009355 7.0e-25 119.0 221 35.7
VMungo0251G2942 Vigna mungo HOM05D007857 ORTHO05D009355 1.2e-24 118.2 259 33.6
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 8.6e-23 112.1 172 41.3
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 8.6e-23 112.1 198 35.4
PGR119G0189 Punica granatum HOM05D007857 ORTHO05D009355 4.2e-22 109.8 303 32.0
Migut.K00709 Erythranthe guttata HOM05D007857 ORTHO05D009355 1.6e-21 107.8 150 42.0
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 2.8e-21 107.1 299 32.4
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 6.8e-20 102.4 170 37.1
Aa31sc48G30 Aethionema arabicum HOM05D010720 ORTHO05D009355 1.2e-19 101.7 176 38.6
Nitab4.5_0004967g0040 Nicotiana tabacum HOM05D007857 ORTHO05D009355 2.2e-18 97.4 85 49.4
Cc11_g16750 Coffea canephora HOM05D007857 ORTHO05D009355 2.8e-18 97.1 256 30.1
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 1.1e-17 95.1 174 35.1
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 1.4e-17 94.7 308 31.2
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 1.8e-17 94.4 284 31.3
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 3.2e-17 93.6 168 36.3
SGA_v2.0_scaffold9G04766 Striga asiatica HOM05D007857 ORTHO05D009355 1.2e-16 91.7 128 42.2
Aqoxy3G01489 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 4.5e-16 89.7 117 43.6
SHI17949 Sapria himalayana HOM05D007857 ORTHO05D009355 1.0e-15 88.6 301 28.9
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 2.9e-15 87.0 160 35.6
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 3.9e-15 86.7 160 35.6
BcaNung05070 Brassica carinata HOM05D010720 ORTHO05D009355 8.6e-15 85.5 160 35.0
Nitab4.5_0000146g0080 Nicotiana tabacum HOM05D007857 ORTHO05D009355 8.6e-15 85.5 70 54.3
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 1.5e-14 84.7 160 35.0
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 1.5e-14 84.7 160 35.0
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 2.5e-14 84.0 160 34.4
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 7.3e-14 82.4 126 38.9
BcaB05g24293 Brassica carinata HOM05D010720 ORTHO05D009355 6.1e-13 79.3 164 31.1
Sp5g22550 Schrenkiella parvula HOM05D010720 ORTHO05D009355 6.1e-13 79.3 130 37.7
BcaC03g14845 Brassica carinata HOM05D010720 ORTHO05D009355 8.0e-13 79.0 164 31.7
BolC2t08453H Brassica oleracea HOM05D010720 ORTHO05D009355 8.0e-13 79.0 164 31.7
C02p23110 Brassica napus HOM05D010720 ORTHO05D009355 1.8e-12 77.8 164 31.7
A02p14300 Brassica napus HOM05D010720 ORTHO05D009355 5.2e-12 76.3 164 30.5
BraA02t06491Z Brassica rapa HOM05D010720 ORTHO05D009355 5.2e-12 76.3 164 30.5
ATR0686G174 Amborella trichopoda HOM05D007857 ORTHO05D009355 2.2e-10 70.9 259 27.8
ECA233G3449 Erigeron canadensis HOM05D007857 ORTHO05D009355 1.2e-08 65.1 249 26.1
Lsat_1_v5_gn_8_149921 Lactuca sativa HOM05D007857 ORTHO05D009355 7.8e-08 62.4 226 27.9


User provided reference genes

Program Settings