Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.6e-288 995.3 487 100.0
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.9e-282 974.5 487 97.1
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.9e-281 971.8 487 96.9
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 4.2e-281 970.7 487 97.5
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.2e-280 969.1 487 96.5
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.1e-280 968.4 487 95.3
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 3.5e-280 967.6 487 96.5
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.8e-279 965.3 487 95.5
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.8e-279 965.3 487 96.3
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.8e-279 965.3 486 96.7
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 5.1e-279 963.8 487 96.3
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 2.5e-273 944.9 487 94.7
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.6e-272 942.2 487 93.6
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 1.6e-272 942.2 487 93.0
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 3.6e-272 941.0 487 92.8
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 3.6e-272 941.0 487 93.6
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.0e-271 939.5 486 94.0
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 1.8e-271 938.7 484 93.8
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 2.3e-271 938.3 492 93.1
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 3.0e-271 937.9 487 93.4
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 3.0e-271 937.9 487 93.8
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 5.1e-271 937.2 487 93.4
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 8.8e-271 936.4 487 93.2
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 8.8e-271 936.4 487 92.8
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-270 936.0 486 93.8
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 1.1e-270 936.0 487 92.4
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.5e-270 934.9 487 92.6
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.5e-270 934.9 487 93.4
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.3e-270 934.5 487 92.2
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 4.3e-270 934.1 484 93.0
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 5.7e-270 933.7 485 92.4
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 5.7e-270 933.7 486 94.0
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 7.4e-270 933.3 484 92.6
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 7.4e-270 933.3 486 93.2
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.7e-269 932.2 484 92.1
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.2e-269 931.8 487 92.6
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 3.7e-269 931.0 486 92.4
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 6.3e-269 930.2 484 92.1
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 6.3e-269 930.2 485 92.4
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.1e-268 929.5 483 92.8
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.4e-268 929.1 486 92.2
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 4.1e-268 927.5 487 92.2
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 9.1e-268 926.4 487 92.8
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.2e-267 926.0 480 92.7
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.5e-267 925.6 485 92.4
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 2.0e-267 925.2 484 91.7
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 2.0e-267 925.2 486 91.8
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 2.0e-267 925.2 486 91.8
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 2.6e-267 924.9 487 91.4
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 4.5e-267 924.1 485 92.2
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 5.9e-267 923.7 487 92.0
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 5.9e-267 923.7 485 92.4
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 7.7e-267 923.3 485 92.0
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.0e-266 922.9 486 92.2
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.3e-266 922.5 486 91.8
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.7e-266 922.2 484 91.5
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 1.7e-266 922.2 484 91.5
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 1.7e-266 922.2 484 91.5
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.9e-266 921.4 487 91.8
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 5.0e-266 920.6 486 91.6
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 6.5e-266 920.2 486 91.4
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 6.5e-266 920.2 486 91.2
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 8.5e-266 919.8 487 91.6
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 8.5e-266 919.8 484 91.3
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 1.1e-265 919.5 488 91.4
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 1.4e-265 919.1 493 91.1
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 1.9e-265 918.7 479 92.1
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 4.2e-265 917.5 486 92.0
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 4.2e-265 917.5 487 91.4
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 4.2e-265 917.5 487 92.0
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 5.5e-265 917.1 484 91.7
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 7.2e-265 916.8 487 90.8
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 7.2e-265 916.8 487 91.6
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 7.2e-265 916.8 487 91.2
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 9.4e-265 916.4 482 91.7
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 9.4e-265 916.4 487 91.2
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 9.4e-265 916.4 484 91.5
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 9.4e-265 916.4 474 93.5
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.2e-264 916.0 486 91.4
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 1.2e-264 916.0 487 91.4
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 1.6e-264 915.6 487 91.0
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 2.1e-264 915.2 485 90.9
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 4.7e-264 914.1 486 91.2
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 4.7e-264 914.1 487 91.0
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 6.1e-264 913.7 487 91.0
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 6.1e-264 913.7 486 90.9
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.4e-263 912.5 487 91.0
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.4e-263 912.5 487 91.2
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.4e-263 912.5 477 92.5
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 2.3e-263 911.8 487 91.2
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 5.1e-263 910.6 486 90.9
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 1.1e-262 909.4 489 90.8
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 1.5e-262 909.1 487 90.3
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 5.7e-262 907.1 484 90.9
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 5.7e-262 907.1 488 90.6
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 7.4e-262 906.7 480 91.2
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 8.2e-261 903.3 486 90.1
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 1.8e-260 902.1 453 95.6
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 1.8e-260 902.1 486 89.9
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 1.2e-259 899.4 479 91.0
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.6e-259 898.3 483 89.6
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 7.7e-259 896.7 485 90.1
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.2e-258 895.2 483 89.6
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 2.9e-258 894.8 460 94.6
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 5.0e-258 894.0 490 90.6
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 1.9e-257 892.1 460 94.6
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 4.2e-257 891.0 460 93.5
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 1.7e-250 869.0 484 87.6
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.2e-249 864.8 482 87.6
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 7.2e-249 863.6 451 91.4
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 5.7e-246 854.0 463 89.0
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 8.3e-245 850.1 480 83.5
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 5.4e-244 847.4 439 90.7
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 7.0e-244 847.0 436 90.8
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 5.0e-242 840.9 434 90.3
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 4.2e-241 837.8 407 97.5
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 1.2e-238 829.7 431 88.4
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 2.6e-238 828.6 406 96.1
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.3e-237 826.2 406 95.6
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 4.9e-237 824.3 404 95.8
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 1.4e-236 822.8 406 94.6
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 2.0e-230 802.4 486 81.9
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 1.8e-228 795.8 384 98.2
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 9.2e-228 793.5 433 85.5
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 7.0e-220 767.3 420 83.6
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 3.5e-219 765.0 427 82.2
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 4.6e-219 764.6 436 81.9
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 5.6e-217 757.7 392 92.3
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.5e-214 749.6 481 78.4
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.4e-212 742.3 393 91.6
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 1.9e-193 679.5 369 89.7
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.6e-193 677.9 346 92.8
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.6e-185 650.6 486 70.2
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 1.1e-183 647.1 393 74.8
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 4.6e-179 631.7 315 94.9
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.8e-175 619.8 487 68.0
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.6e-174 615.9 486 67.5
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.2e-172 609.0 486 67.1
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 6.7e-170 601.3 331 90.0
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.5e-150 535.4 279 90.7
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 7.0e-143 511.5 351 73.8
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 2.7e-126 456.4 276 75.4
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 8.0e-115 418.3 202 97.5
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 4.7e-99 365.9 180 92.8
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.5e-97 360.9 220 80.5
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 9.2e-95 351.7 172 97.1
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.6e-92 342.4 171 94.7
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.3e-88 331.3 485 43.3
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 1.5e-76 291.2 146 93.2
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 2.5e-68 263.8 146 86.3
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.1e-66 258.5 164 81.1
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 9.0e-66 255.4 127 94.5
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 6.4e-64 249.2 127 89.8
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.2e-62 245.0 147 84.4
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.1e-54 217.6 259 44.4
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 6.7e-53 212.6 127 85.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.3e-51 208.4 102 95.1
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 2.2e-51 207.6 99 96.0
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 3.6e-38 163.7 108 73.1
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 1.3e-35 155.2 102 75.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 8.2e-35 152.5 77 93.5
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 8.2e-35 152.5 77 93.5
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 6.7e-29 132.9 197 38.1
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 8.8e-29 132.5 69 92.8
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.8e-29 132.5 71 90.1
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.7e-27 127.1 69 87.0
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.3e-27 126.3 65 90.8
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.3e-27 126.3 65 90.8
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.6e-25 121.7 66 87.9
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.5e-25 120.6 66 86.4
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 6.1e-22 109.8 65 80.0
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.2e-20 105.5 67 68.7
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 2.0e-20 104.8 65 73.8
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 3.2e-15 87.4 168 35.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 2.3e-13 81.3 71 57.7
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 6.8e-13 79.7 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.5e-12 78.6 72 56.9
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.7e-11 73.9 61 78.7
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.4e-10 71.2 61 65.6
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 9.1e-10 69.3 61 59.0
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 2.1e-06 58.2 40 67.5


User provided reference genes

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