Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1681.4 838 100.0
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1570.8 838 92.5
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1481.8 838 87.1
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1479.2 838 87.0
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1476.5 838 86.6
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1450.6 838 84.1
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1444.5 838 84.0
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1438.3 837 84.0
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1430.6 840 83.7
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1425.6 838 82.9
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1423.3 838 82.7
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1406.7 838 82.9
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1403.7 838 82.6
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1400.2 868 80.4
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1399.0 838 82.6
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1398.6 838 81.1
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1397.9 838 81.1
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1393.3 839 81.4
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1391.3 838 82.2
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1389.0 839 80.5
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1388.6 858 80.7
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1388.6 838 81.4
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1388.2 840 81.2
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1387.9 838 81.7
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1387.9 838 81.7
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1381.3 839 80.9
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1376.3 840 80.8
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1372.8 838 80.0
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1372.5 830 81.7
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1372.1 838 80.2
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1372.1 838 79.5
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1370.9 838 79.8
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1370.1 838 80.3
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1366.7 915 75.5
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1366.3 838 82.9
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1365.5 826 81.0
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1362.8 838 78.6
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1362.4 839 79.9
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1362.1 838 78.5
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1358.2 839 80.0
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1355.5 838 79.1
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1353.2 839 79.7
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1352.8 838 78.6
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1351.7 838 79.0
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1350.1 838 79.2
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1349.0 839 78.9
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1349.0 838 78.6
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1347.0 838 78.3
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1346.3 838 78.3
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1345.5 839 78.9
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1345.5 839 78.2
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1345.1 844 79.0
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1343.9 838 77.9
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1341.3 838 78.3
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1340.5 838 78.6
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1340.5 838 78.0
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1340.1 838 78.5
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1339.7 838 76.7
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1339.7 838 79.2
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1339.3 845 77.8
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 838 78.2
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 838 78.3
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 845 77.4
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 845 77.4
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 839 78.1
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1332.0 967 70.7
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1328.2 840 77.5
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 911 72.8
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 851 78.1
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1327.4 838 76.6
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1326.6 904 74.0
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1326.6 845 77.3
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1324.7 858 77.2
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 838 77.4
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1322.0 870 75.7
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1314.3 911 73.2
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 843 75.4
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1307.4 841 76.0
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1290.8 819 77.7
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1280.0 838 76.0
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1271.5 825 77.0
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1269.6 826 75.9
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1266.9 781 77.8
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1263.1 842 75.2
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1254.2 751 81.8
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1253.4 867 72.8
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1246.9 764 79.2
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1242.6 765 78.6
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1239.9 776 79.0
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1239.9 788 77.2
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1237.6 766 78.2
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1229.9 842 74.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1229.2 839 74.1
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1168.3 858 67.4
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1166.4 685 82.9
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1165.6 839 67.9
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1159.8 748 74.7
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1154.0 823 68.8
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1147.9 844 66.5
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1143.3 838 69.7
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1136.3 697 78.9
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1112.1 852 65.0
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1104.0 839 66.9
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 5.7e-312 1073.9 853 64.2
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.1e-304 1048.9 839 62.6
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 7.9e-304 1047.0 654 78.4
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 8.5e-282 973.8 845 62.4
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 7.5e-262 907.5 642 72.0
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 2.1e-240 836.3 542 73.6
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.3e-226 790.4 513 75.2
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 3.2e-204 716.1 417 83.7
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 4.5e-158 562.8 329 83.3
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 1.5e-121 441.4 300 77.0
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 6.2e-115 419.5 254 81.1
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.4e-113 413.7 307 65.8
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 7.1e-111 406.0 285 71.6
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 5.3e-98 363.2 194 91.8
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 6.7e-93 346.3 263 68.1
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 7.9e-86 322.8 388 49.5
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-66 259.2 275 54.2
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 5.3e-66 256.9 182 72.0
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.8e-51 207.2 139 74.1
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 1.2e-46 192.6 176 61.9
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.1e-46 191.8 140 65.0
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 9.8e-44 183.0 117 77.8
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 1.3e-35 156.0 94 77.7
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.6e-33 149.1 82 84.1
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 1.2e-30 139.4 82 82.9
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 8.9e-29 133.3 85 72.9
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 2.7e-25 121.7 74 83.8
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 1.0e-24 119.8 84 75.0
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.0e-24 118.2 76 72.4
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 4.7e-22 110.9 67 80.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 4.1e-18 97.8 68 67.6
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 7.3e-15 87.0 105 51.4
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.4e-10 72.0 42 85.7
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 2.7e-09 68.6 50 68.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 3.9e-08 64.7 41 78.0


User provided reference genes

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