Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 0.0e+00 1446.0 720 100.0
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 0.0e+00 1253.8 710 87.0
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 0.0e+00 1248.8 711 85.9
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 0.0e+00 1238.8 711 85.0
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 0.0e+00 1095.9 698 77.2
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 0.0e+00 1078.9 713 75.0
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 0.0e+00 1078.5 712 74.6
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 1.6e-308 1062.4 715 72.0
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 5.9e-308 1060.4 708 73.3
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 1.4e-304 1049.3 720 74.6
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 2.2e-302 1042.0 716 71.5
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 2.9e-302 1041.6 708 71.0
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 2.4e-301 1038.5 713 69.4
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 3.2e-301 1038.1 751 69.8
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 7.8e-300 1033.5 738 67.9
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 1.0e-299 1033.1 707 71.6
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 9.5e-298 1026.5 710 70.4
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 1.8e-296 1022.3 709 69.7
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 3.7e-294 1014.6 694 72.5
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 5.4e-293 1010.7 776 63.8
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 6.0e-292 1007.3 716 69.6
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 1.1e-290 1003.0 717 69.7
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 1.6e-289 999.2 715 68.0
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 1.4e-288 996.1 712 69.1
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 1.8e-288 995.7 718 68.1
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 5.4e-285 984.2 698 69.1
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 1.3e-283 979.5 707 66.9
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 2.3e-283 978.8 706 67.1
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 3.9e-283 978.0 714 67.8
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 5.6e-282 974.2 707 66.9
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 5.6e-282 974.2 665 71.1
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 5.6e-282 974.2 707 67.0
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 9.6e-282 973.4 734 65.7
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 1.6e-281 972.6 706 67.1
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 2.1e-281 972.2 707 66.6
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 2.1e-281 972.2 706 66.9
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 4.4e-279 964.5 707 66.1
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 7.6e-279 963.8 669 70.6
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 9.9e-279 963.4 708 65.8
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 2.9e-278 961.8 711 65.5
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 4.9e-278 961.1 710 65.9
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 6.4e-278 960.7 708 66.0
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 1.9e-277 959.1 707 65.5
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 9.3e-277 956.8 707 66.3
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 1.6e-276 956.1 712 67.1
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 2.7e-276 955.3 708 66.4
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 3.5e-276 954.9 707 66.1
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 4.6e-276 954.5 707 65.8
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 6.0e-276 954.1 673 68.9
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.0e-275 953.4 707 65.8
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 1.0e-275 953.4 707 65.3
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 1.7e-275 952.6 707 65.2
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 2.3e-275 952.2 707 66.9
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 6.6e-275 950.7 708 65.0
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 6.6e-275 950.7 707 65.2
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 1.1e-274 949.9 699 66.7
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 3.3e-274 948.3 707 64.9
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 4.3e-274 948.0 682 67.9
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 7.3e-274 947.2 614 75.6
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 1.3e-273 946.4 698 67.5
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 2.1e-273 945.7 707 65.2
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 3.6e-273 944.9 759 62.8
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 4.8e-273 944.5 681 67.7
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 8.1e-273 943.7 710 65.8
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 3.4e-271 938.3 687 67.0
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.3e-270 936.4 666 69.1
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.2e-268 929.9 690 65.8
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 3.5e-268 928.3 654 69.1
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 4.6e-268 927.9 708 64.4
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 1.8e-267 926.0 709 64.3
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 7.4e-266 920.6 689 65.3
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 4.5e-263 911.4 517 86.1
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 4.5e-263 911.4 693 65.2
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.2e-262 909.1 717 63.5
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 2.9e-262 908.7 693 65.1
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 1.0e-259 900.2 707 64.4
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 7.6e-255 884.0 706 62.0
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 1.9e-253 879.4 649 67.0
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 7.1e-253 877.5 672 65.0
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.1e-252 875.9 688 62.6
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.1e-244 849.4 740 60.5
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 3.6e-244 848.6 703 60.5
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 4.6e-244 848.2 688 61.8
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 4.8e-241 838.2 671 60.7
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.1e-236 822.8 528 77.3
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 2.1e-236 822.8 619 67.4
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 2.2e-233 812.8 983 46.7
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 2.2e-233 812.8 681 59.9
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 7.9e-228 794.3 524 73.7
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 1.4e-227 793.5 547 69.5
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 3.8e-222 775.4 631 63.1
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.2e-220 770.4 572 65.7
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 9.7e-218 760.8 689 56.6
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 4.9e-201 705.3 675 55.9
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 1.0e-195 687.6 578 59.9
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 1.7e-193 680.2 637 56.0
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 1.6e-183 647.1 430 71.4
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 1.9e-176 623.6 650 48.6
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.2e-175 620.9 677 47.9
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 5.2e-163 578.9 367 76.0
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.8e-150 537.3 424 60.8
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 5.6e-141 505.8 369 64.8
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 1.2e-130 471.5 497 46.7
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 1.8e-126 457.6 385 59.0
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 8.8e-126 455.3 393 59.0
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 1.1e-120 438.3 325 66.2
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 5.7e-117 426.0 441 49.2
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 2.1e-111 407.5 279 71.7
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.6e-106 390.6 310 60.0
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 8.0e-103 379.0 277 64.6
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 3.3e-101 373.6 324 61.4
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 4.8e-100 369.8 763 35.3
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 2.3e-89 334.3 233 71.7
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 2.8e-87 327.4 354 49.2
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 2.8e-84 317.4 239 63.2
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.2e-76 291.2 282 55.3
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.3e-73 282.0 428 40.0
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-73 279.6 383 40.2
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 5.8e-69 266.5 583 32.1
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 2.1e-58 231.5 628 29.6
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 3.1e-46 191.0 354 39.5
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 4.0e-46 190.7 284 40.8
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 7.1e-43 179.9 113 75.2
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 9.0e-38 162.9 111 76.6
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 9.9e-37 159.5 122 60.7
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.9e-36 157.9 215 43.7
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 7.1e-35 153.3 223 41.3
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.1e-33 147.1 216 41.7
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 6.7e-33 146.7 103 70.9
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 7.6e-29 133.3 125 56.8
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 5.5e-27 127.1 84 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 1.2e-21 109.4 74 66.2
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 1.5e-16 92.4 165 37.6
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 4.3e-16 90.9 88 48.9
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 9.7e-16 89.7 436 22.9
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 1.6e-15 89.0 387 24.3
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.6e-15 89.0 112 42.0
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.1e-14 86.3 88 50.0
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 9.0e-14 83.2 46 76.1
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 2.6e-13 81.6 60 71.7
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.4e-13 81.3 53 64.2
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.4e-13 81.3 46 73.9
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.8e-12 77.8 46 71.7
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 8.5e-12 76.6 50 66.0
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 8.8e-09 66.6 247 29.1
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 5.7e-08 63.9 43 74.4
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 7.4e-08 63.5 60 48.3
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 9.7e-08 63.2 223 30.0
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 4.8e-07 60.8 53 60.4


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