Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G269300 Theobroma cacao HOM05D002970 ORTHO05D009571 5.4e-146 521.2 297 100.0
COL.COLO4_23553 Corchorus olitorius HOM05D002970 ORTHO05D007037 3.5e-121 438.7 297 78.5
Duzib248G1026 Durio zibethinus HOM05D002970 ORTHO05D009571 4.3e-119 431.8 297 78.1
Gorai.009G334200 Gossypium raimondii HOM05D002970 ORTHO05D009571 1.0e-112 410.6 297 73.7
GSVIVG01010294001 Vitis vinifera HOM05D002970 ORTHO05D009571 4.4e-100 368.6 315 61.9
QL03p055861 Quercus lobata HOM05D002970 ORTHO05D009571 9.9e-100 367.5 288 67.0
Gohir.D05G312700 Gossypium hirsutum HOM05D002970 ORTHO05D009571 2.7e-97 359.4 297 67.0
Gohir.A05G311600 Gossypium hirsutum HOM05D002970 ORTHO05D009571 6.0e-97 358.2 256 73.8
CiPaw.05G175600 Carya illinoinensis HOM05D002970 ORTHO05D009571 1.1e-93 347.4 292 62.0
CSS0013806 Camellia sinensis var. sinensis HOM05D002970 ORTHO05D009571 6.4e-91 338.2 263 66.5
Prupe.1G238700 Prunus persica HOM05D002970 ORTHO05D009571 8.4e-91 337.8 286 61.2
Ciclev10032228m.g Citrus clementina HOM05D002970 ORTHO05D009571 2.4e-90 336.3 265 66.0
Potri.008G181400 Populus trichocarpa HOM05D002970 ORTHO05D009571 1.0e-88 330.9 284 62.7
RcHm_v2.0_Chr4g0432001 Rosa chinensis HOM05D002970 ORTHO05D009571 1.0e-88 330.9 309 59.2
MD16G1107600 Malus domestica HOM05D002970 ORTHO05D009571 1.3e-88 330.5 282 61.3
FAN12G3280 Fragaria x ananassa HOM05D002970 ORTHO05D009571 1.3e-86 323.9 293 57.7
Manes.12G018300 Manihot esculenta HOM05D002970 ORTHO05D009571 1.6e-86 323.6 288 61.8
Atru.chr11.2205 Acer truncatum HOM05D002970 ORTHO05D009571 2.1e-86 323.2 276 62.0
FvH4_4g24960 Fragaria vesca HOM05D002970 ORTHO05D009571 2.8e-86 322.8 293 57.3
CANSAT01G2975 Cannabis sativa HOM05D002970 ORTHO05D009571 3.7e-86 322.4 284 61.6
Atru.BG.282.p Acer truncatum HOM05D002970 ORTHO05D009571 9.0e-85 317.8 203 75.9
FAN17G2692 Fragaria x ananassa HOM05D002970 ORTHO05D009571 9.9e-84 314.3 295 56.6
Haze_12309 Corylus avellana HOM05D007119 ORTHO05D009220 1.3e-83 313.9 315 56.5
TPR.G6253 Trifolium pratense HOM05D002970 ORTHO05D009571 1.7e-83 313.5 290 59.0
Ca_17805_v3 Cicer arietinum L. HOM05D002970 ORTHO05D009571 4.9e-83 312.0 260 62.7
Cc11_g16280 Coffea canephora HOM05D002970 ORTHO05D009571 2.5e-82 309.7 285 56.5
Lalb_Chr07g0185611 Lupinus albus HOM05D002970 ORTHO05D009571 3.2e-82 309.3 203 77.3
Phvul.002G257900 Phaseolus vulgaris HOM05D002970 ORTHO05D009571 3.2e-82 309.3 266 60.5
Sabra08G0138400 Salix brachista HOM05D000799 ORTHO05D000629 3.5e-81 305.8 290 59.7
CAN.G49.8 Capsicum annuum HOM05D002970 ORTHO05D009571 4.6e-81 305.4 282 57.8
Sopen05g009220 Solanum pennellii HOM05D002970 ORTHO05D009571 7.9e-81 304.7 278 58.6
Nitab4.5_0000041g0260 Nicotiana tabacum HOM05D002970 ORTHO05D009571 5.1e-80 302.0 267 60.3
Medtr8g089550 Medicago truncatula HOM05D002970 ORTHO05D009571 1.1e-79 300.8 219 68.0
CsaV3_2G025140 Cucumis sativus L. HOM05D002970 ORTHO05D009571 1.5e-79 300.4 289 56.7
Nitab4.5_0002688g0010 Nicotiana tabacum HOM05D002970 ORTHO05D009571 2.5e-79 299.7 266 59.0
PGSC0003DMG400010736 Solanum tuberosum HOM05D002970 ORTHO05D009571 5.6e-79 298.5 275 57.5
MELO3C010711.2 Cucumis melo HOM05D002970 ORTHO05D009571 1.3e-78 297.4 287 55.7
MBI11_g24187_MAGBIO Magnolia biondii HOM05D002970 ORTHO05D009571 3.7e-78 295.8 294 56.1
PGR102G3027 Punica granatum HOM05D002970 ORTHO05D009571 6.2e-78 295.0 202 71.8
Aqoxy5G03608 Aquilegia oxysepala HOM05D002970 ORTHO05D009571 1.8e-77 293.5 267 57.3
Peaxi162Scf00128g00724 Petunia axillaris HOM05D002970 ORTHO05D009571 1.8e-77 293.5 265 58.5
Lj6C818G9 Lonicera japonica HOM05D002970 ORTHO05D009571 5.3e-77 292.0 301 54.2
EL10Ac6g15186 Beta vulgaris HOM05D002970 ORTHO05D009571 3.4e-76 289.3 305 54.8
AT3G26085 Arabidopsis thaliana HOM05D002970 ORTHO05D009571 4.5e-76 288.9 275 56.4
Eucgr.B03232 Eucalyptus grandis HOM05D002970 ORTHO05D009571 7.6e-76 288.1 225 63.6
THA.LOC104825684 Tarenaya hassleriana HOM05D002970 ORTHO05D009571 1.3e-75 287.3 285 56.1
BcaC06g31093 Brassica carinata HOM05D002970 ORTHO05D009571 2.2e-75 286.6 265 57.4
Thhalv10004665m.g Eutrema salsugineum HOM05D002970 ORTHO05D009571 2.9e-75 286.2 279 53.0
CARHR147070 Cardamine hirsuta HOM05D002970 ORTHO05D009571 3.8e-75 285.8 278 54.0
AL5G14780 Arabidopsis lyrata HOM05D002970 ORTHO05D009571 1.1e-74 284.3 271 54.6
Sp2g15280 Schrenkiella parvula HOM05D002970 ORTHO05D009571 1.4e-74 283.9 286 52.8
A06p42260 Brassica napus HOM05D007119 ORTHO05D009220 1.9e-74 283.5 265 56.6
arahy.Tifrunner.gnm1.ann1.C1FJC6 Arachis hypogaea HOM05D002970 ORTHO05D009571 3.2e-74 282.7 194 73.2
BcaC06g31096 Brassica carinata HOM05D007119 ORTHO05D009220 5.5e-74 282.0 265 55.1
BcaC06g33929 Brassica carinata HOM05D002970 ORTHO05D009571 5.5e-74 282.0 265 55.1
BolC7t44037H Brassica oleracea HOM05D007119 ORTHO05D009220 5.5e-74 282.0 267 56.2
C07p35060 Brassica napus HOM05D007119 ORTHO05D009220 7.1e-74 281.6 267 56.2
PSO782G2321 Papaver somniferum HOM05D002970 ORTHO05D009571 7.1e-74 281.6 200 70.0
arahy.Tifrunner.gnm1.ann1.4Z4H5J Arachis hypogaea HOM05D002970 ORTHO05D009571 9.3e-74 281.2 216 67.6
BraA06t27142Z Brassica rapa HOM05D007119 ORTHO05D009220 9.3e-74 281.2 293 53.9
Psat7g060120 Pisum sativum HOM05D002970 ORTHO05D009571 2.1e-73 280.0 198 68.2
Carub.0005s0396 Capsella rubella HOM05D002970 ORTHO05D009571 7.9e-73 278.1 264 53.4
vmacro16152 Vaccinium macrocarpon HOM05D002970 ORTHO05D009571 7.9e-73 278.1 328 49.7
SalBow2G2585 Salvia bowleyana HOM05D002970 ORTHO05D009571 5.1e-72 275.4 221 64.7
ECA234G3025 Erigeron canadensis HOM05D002970 ORTHO05D009571 4.3e-71 272.3 269 53.2
Lsat_1_v5_gn_4_2440 Lactuca sativa HOM05D000799 ORTHO05D009571 1.3e-70 270.8 262 56.1
Hund25423 Selenicereus undatus HOM05D002970 ORTHO05D009571 2.2e-70 270.0 262 55.7
HanXRQChr17g0569221 Helianthus annuus HOM05D002970 ORTHO05D009571 4.8e-70 268.9 259 55.2
ATR0824G068 Amborella trichopoda HOM05D002970 ORTHO05D009571 1.4e-69 267.3 219 61.6
PSO063G2167 Papaver somniferum HOM05D002970 ORTHO05D009571 7.7e-68 261.5 218 61.5
TAR371G0312 Trochodendron aralioides HOM05D002970 ORTHO05D007037 2.9e-67 259.6 265 55.1
AUR62005542 Chenopodium quinoa HOM05D002970 ORTHO05D009571 3.6e-65 252.7 305 49.8
Cpa.g.sc86.6 Carica papaya HOM05D002970 ORTHO05D009571 7.9e-65 251.5 392 41.3
Lj4g0006456 Lotus japonicus HOM05D002970 ORTHO05D009571 1.0e-64 251.1 227 61.7
Zm00001eb406400 Zea mays HOM05D002970 ORTHO05D009571 3.9e-64 249.2 204 58.3
HPP92_024537 Vanilla planifolia HOM05D002970 ORTHO05D009571 1.1e-63 247.7 204 57.8
AUR62024190 Chenopodium quinoa HOM05D002970 ORTHO05D007037 4.3e-63 245.7 220 59.1
MD13G1107700 Malus domestica HOM05D002970 ORTHO05D009571 5.7e-63 245.4 263 54.4
Migut.K00672 Erythranthe guttata HOM05D002970 ORTHO05D009571 2.4e-61 240.0 214 59.3
ClCG08G017480 Citrullus lanatus HOM05D002970 ORTHO05D009571 6.9e-61 238.4 356 44.1
CDE02G1212 Ceratophyllum demersum HOM05D002970 ORTHO05D009571 2.0e-60 236.9 219 56.2
Nn4g22479 Nelumbo nucifera HOM05D002970 ORTHO05D009571 7.7e-60 235.0 243 54.7
Solyc05g014190.4 Solanum lycopersicum HOM05D002970 ORTHO05D009571 2.1e-57 226.9 234 53.8
Aa31LG2G6280 Aethionema arabicum HOM05D002970 ORTHO05D009571 4.7e-57 225.7 273 48.7
TWI36G0308 Tripterygium wilfordii HOM05D002970 ORTHO05D009571 5.1e-56 222.2 256 52.0
unitig_749.g13282 Utricularia gibba HOM05D002970 ORTHO05D009571 1.2e-49 201.1 142 66.2
Pp3c24_16920 Physcomitrium patens HOM05D002970 ORTHO05D009571 6.3e-46 188.7 192 47.9
Mapoly0082s0035 Marchantia polymorpha HOM05D002970 ORTHO05D009571 1.1e-42 177.9 204 42.2
AagrBONN_evm.TU.Sc2ySwM_344.962 Anthoceros agrestis HOM05D002970 ORTHO05D009571 1.4e-40 171.0 194 45.4
CSS0042994 Camellia sinensis var. sinensis HOM05D002970 ORTHO05D009571 7.5e-39 165.2 95 78.9
Dinv14770 Davidia involucrata HOM05D002970 ORTHO05D009571 7.5e-39 165.2 205 49.8
SMO365G0071 Selaginella moellendorffii HOM05D002970 ORTHO05D009571 1.7e-38 164.1 186 47.8
Glyma.05G172100 Glycine max HOM05D002970 ORTHO05D009571 6.1e-33 145.6 128 61.7
Sed0000980 Sechium edule HOM05D002970 ORTHO05D009571 8.8e-32 141.7 130 60.8
MSTRG.542 Avicennia marina HOM05D002970 ORTHO05D009571 1.4e-29 134.4 167 44.9
DCAR_007026 Daucus carota HOM05D002970 ORTHO05D007037 5.5e-26 122.5 202 46.0
PRCOL_00001586 Prasinoderma coloniale HOM05D002970 ORTHO05D009571 1.0e-24 118.2 190 34.7
CBR_g20339 Chara braunii HOM05D002970 ORTHO05D009571 1.4e-24 117.9 160 40.6
Cre12.g556150 Chlamydomonas reinhardtii HOM05D002970 ORTHO05D009571 3.9e-19 99.8 125 37.6
Glyma.06G231900 Glycine max HOM05D002970 ORTHO05D009571 2.5e-18 97.1 62 69.4
MBI11_g22623_MAGBIO Magnolia biondii HOM05D002970 ORTHO05D009571 1.6e-17 94.4 90 51.1
MCO09G664 Micromonas commoda HOM05D002970 ORTHO05D009571 6.8e-16 89.0 117 38.5
arahy.Tifrunner.gnm1.ann1.WDY3XU Arachis hypogaea HOM05D002970 ORTHO05D009571 2.0e-15 87.4 140 45.0
CiPaw.09G014900 Carya illinoinensis HOM05D002970 ORTHO05D009571 1.2e-12 78.2 128 41.4
CiPaw.11G163100 Carya illinoinensis HOM05D002970 ORTHO05D009571 1.2e-12 78.2 128 41.4
SEGI_41532 Sequoiadendron giganteum HOM05D031330 ORTHO05D009571 2.7e-12 77.0 190 31.6


User provided reference genes

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