Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 0.0e+00 1116.3 698 100.0
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.2e-282 974.5 690 83.5
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 2.5e-279 965.3 690 85.9
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 2.4e-277 958.7 690 81.4
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.7e-275 952.6 690 81.2
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.8e-272 942.6 690 75.7
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 2.2e-238 829.3 689 73.9
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 9.1e-237 823.9 689 74.5
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 4.2e-234 815.1 691 69.5
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 3.0e-232 808.9 687 69.3
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 1.7e-230 803.1 693 68.7
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 1.6e-228 796.6 714 62.3
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 5.9e-228 794.7 685 69.9
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 2.9e-227 792.3 702 67.1
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 5.5e-226 788.1 685 69.9
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 3.0e-224 782.3 684 68.1
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 9.7e-223 777.3 724 66.3
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.3e-222 776.9 699 67.4
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.0e-220 769.6 693 64.6
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 7.7e-220 767.7 704 74.3
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 1.0e-219 767.3 706 65.6
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.7e-219 766.5 695 67.3
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 2.5e-218 762.7 702 66.0
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.2e-218 761.9 697 68.1
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 6.1e-217 758.1 685 69.9
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.8e-216 756.5 693 72.7
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 6.8e-216 754.6 682 70.8
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 3.4e-215 752.3 690 66.1
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 2.8e-214 749.2 686 61.7
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 3.7e-214 748.8 687 69.3
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 4.1e-213 745.3 691 66.6
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.0e-212 743.0 692 65.8
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 2.3e-211 739.6 689 64.9
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 5.5e-210 734.9 684 70.8
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 1.2e-209 733.8 692 65.0
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 1.6e-209 733.4 686 63.7
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 2.1e-209 733.0 698 63.6
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 2.8e-209 732.6 690 62.6
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 4.7e-209 731.9 694 71.6
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 6.1e-209 731.5 685 64.5
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.0e-208 730.7 692 60.1
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 1.5e-207 726.9 702 67.5
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 5.7e-207 724.9 694 64.0
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 5.7e-207 724.9 702 59.5
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 7.5e-207 724.5 682 63.6
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 9.8e-207 724.2 691 62.8
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 1.3e-206 723.8 662 64.5
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 3.2e-205 719.2 694 61.0
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 9.2e-205 717.6 681 59.3
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 9.2e-205 717.6 713 58.9
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.5e-204 715.3 689 62.7
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 1.3e-203 713.8 700 63.7
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.9e-203 712.6 685 64.1
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 3.9e-203 712.2 691 66.4
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 5.0e-203 711.8 695 63.5
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 6.6e-203 711.4 690 64.9
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.5e-202 710.3 697 62.3
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.9e-202 709.9 706 62.6
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 2.8e-201 706.1 691 60.3
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 6.1e-201 704.9 680 59.6
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 1.0e-200 704.1 687 59.7
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 1.0e-200 704.1 682 61.7
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 2.0e-199 699.9 684 60.1
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 3.4e-199 699.1 690 66.7
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 9.8e-199 697.6 687 60.6
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.3e-198 697.2 687 59.8
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.3e-198 697.2 687 59.8
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.3e-198 697.2 701 59.5
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 3.2e-197 692.6 668 64.2
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 2.7e-196 689.5 679 64.2
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 3.0e-195 686.0 677 58.9
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 5.2e-192 675.2 681 63.4
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 6.8e-192 674.9 691 58.2
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 1.3e-190 670.6 703 58.7
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 1.7e-190 670.2 668 64.7
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 4.9e-190 668.7 694 58.4
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 1.2e-188 664.1 694 55.9
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.7e-188 662.9 684 62.1
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 3.5e-188 662.5 687 60.1
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 8.6e-187 657.9 687 61.7
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 6.2e-185 651.7 677 55.7
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 2.6e-183 646.4 683 59.4
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.1e-181 641.0 750 57.3
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.1e-178 630.9 681 56.2
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 3.3e-178 629.4 695 59.1
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 7.3e-178 628.2 708 59.2
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.1e-177 624.8 683 55.1
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 5.4e-173 612.1 702 60.7
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 3.5e-172 609.4 699 58.9
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 8.7e-171 604.7 691 58.8
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.1e-168 597.8 695 58.4
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.8e-168 597.0 697 62.0
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 3.4e-167 592.8 698 58.5
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 3.8e-166 589.3 698 58.3
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 4.2e-165 585.9 696 58.2
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 1.3e-163 580.9 697 55.7
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.9e-162 577.0 534 57.9
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.3e-161 574.3 528 59.5
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 6.2e-161 572.0 528 59.1
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.4e-160 570.9 528 59.5
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.3e-158 564.3 448 67.0
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.4e-157 560.1 547 55.9
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 4.8e-153 545.8 691 53.1
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 2.4e-152 543.5 532 65.0
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 4.5e-151 539.3 789 51.0
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.6e-151 538.5 660 50.9
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.7e-148 530.0 538 55.2
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.2e-140 504.6 468 68.6
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.6e-140 504.2 521 54.1
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 5.7e-138 495.7 511 52.6
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 2.0e-135 487.3 681 49.6
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 3.0e-131 473.4 640 45.8
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 5.5e-125 452.6 603 50.1
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 5.2e-115 419.5 346 66.8
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 2.6e-114 417.2 508 49.4
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 7.5e-114 415.6 512 46.9
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 2.4e-112 410.6 516 60.3
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 5.3e-112 409.5 396 57.3
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 8.5e-110 402.1 414 66.4
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 2.0e-103 380.9 311 64.6
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 3.5e-103 380.2 315 65.1
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 2.2e-102 377.5 530 45.5
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.0e-99 366.7 247 74.9
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 4.5e-95 353.2 543 41.4
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 6.6e-94 349.4 463 45.4
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 7.5e-90 335.9 392 51.8
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.2e-89 334.3 685 38.5
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 2.2e-89 334.3 502 44.4
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 2.9e-89 334.0 525 39.6
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 6.6e-86 322.8 524 38.4
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 4.3e-85 320.1 337 62.3
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.6e-84 318.2 400 56.5
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.6e-84 318.2 446 45.1
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.5e-82 311.6 534 44.9
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 2.5e-77 294.3 300 68.7
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.5e-55 220.7 334 54.8
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 6.6e-54 216.5 519 30.3
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 2.1e-44 184.9 134 67.2
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 2.0e-34 151.8 137 57.7
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.9e-33 147.1 269 39.4
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.3e-30 139.0 146 56.8
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.1e-28 131.7 255 38.4
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 9.3e-24 116.3 94 58.5
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-23 114.8 255 38.0
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 7.9e-23 113.2 96 58.3
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.3e-19 100.5 102 54.9
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.1e-19 99.8 216 36.6
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.5e-18 99.0 85 57.6
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.6e-18 98.2 220 35.5
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.7e-17 95.5 80 60.0
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.2e-17 95.1 265 54.0
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-16 91.3 230 35.2
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.2e-16 90.9 79 60.8
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 3.7e-12 77.8 108 46.3
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.1e-11 76.3 72 54.2
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 3.1e-11 74.7 225 42.2
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 5.3e-11 73.9 57 71.9
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 6.9e-11 73.6 124 41.9
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 9.1e-11 73.2 74 60.8
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 2.6e-10 71.6 82 52.4
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 1.7e-09 68.9 56 66.1
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 3.8e-09 67.8 82 53.7
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 8.5e-09 66.6 41 73.2
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.9e-08 65.5 74 48.6
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 7.2e-08 63.5 65 50.8
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-07 61.6 243 28.8
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 7.9e-07 60.1 66 47.0
HPP92_028506 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-06 58.9 54 63.0
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.3e-06 58.5 57 56.1
BcaB07g32274 Brassica carinata HOM05D003551 ORTHO05D004869 3.0e-06 58.2 62 46.8
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.0e-06 58.2 73 45.2
Lsat_1_v5_gn_2_63120 Lactuca sativa HOM05D005044 ORTHO05D006799 3.9e-06 57.8 116 34.5


User provided reference genes

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