Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 4.5e-258 894.0 442 100.0
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 2.3e-222 775.4 444 85.1
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 4.7e-207 724.5 445 80.0
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 8.1e-207 723.8 445 80.0
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 2.3e-201 705.7 408 84.6
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 1.7e-196 689.5 432 79.4
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 1.4e-161 573.5 450 64.9
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 4.4e-160 568.5 445 64.5
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 8.2e-159 564.3 453 62.7
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 7.7e-157 557.8 419 65.2
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 1.0e-156 557.4 422 67.1
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 6.5e-156 554.7 420 65.7
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 1.2e-154 550.4 403 66.5
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 1.2e-154 550.4 443 62.1
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 6.1e-154 548.1 420 66.0
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 5.7e-152 541.6 445 62.7
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 7.7e-149 531.2 447 60.9
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 5.0e-148 528.5 421 63.2
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.0e-148 528.5 439 62.4
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 6.5e-148 528.1 445 60.9
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 1.9e-147 526.6 530 55.8
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.2e-147 525.4 445 61.1
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 9.4e-147 524.2 425 61.2
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 9.4e-147 524.2 452 60.4
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 1.6e-146 523.5 418 63.4
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 2.1e-146 523.1 417 64.3
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 3.0e-145 519.2 442 60.2
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.2e-144 517.3 445 60.2
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 1.5e-144 516.9 416 63.0
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.4e-144 515.8 419 63.7
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 3.4e-144 515.8 417 62.6
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.7e-143 513.5 430 62.1
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 4.8e-143 511.9 447 59.5
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 2.4e-142 509.6 416 62.5
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 7.0e-142 508.1 408 63.2
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.6e-141 506.9 427 63.0
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 2.7e-141 506.1 432 61.6
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 3.5e-141 505.8 416 62.0
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 4.5e-141 505.4 426 58.9
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 1.7e-140 503.4 408 62.7
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 2.2e-140 503.1 413 61.5
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 2.9e-140 502.7 423 58.9
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 3.8e-140 502.3 416 61.8
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 5.5e-139 498.4 453 57.2
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 1.2e-138 497.3 416 61.3
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 1.2e-138 497.3 423 58.9
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 2.7e-138 496.1 411 59.9
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 4.7e-138 495.4 435 57.2
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 8.0e-138 494.6 444 57.9
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 1.0e-137 494.2 406 61.3
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 1.4e-137 493.8 404 62.1
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 1.5e-136 490.3 446 57.8
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 2.0e-136 490.0 427 58.8
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 2.0e-136 490.0 421 60.3
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 2.0e-136 490.0 435 56.6
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 2.6e-136 489.6 437 56.8
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 4.4e-136 488.8 447 57.0
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 5.7e-136 488.4 406 61.1
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 3.7e-135 485.7 414 61.1
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 6.3e-135 485.0 436 56.4
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 1.4e-134 483.8 411 60.6
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 1.8e-134 483.4 424 59.0
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 3.1e-134 482.6 434 55.8
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 3.1e-134 482.6 352 68.8
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 1.2e-133 480.7 429 57.6
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 2.0e-133 479.9 441 55.8
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 5.9e-133 478.4 443 56.0
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 6.6e-132 474.9 434 56.5
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 6.6e-132 474.9 434 56.9
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 5.5e-131 471.9 433 57.0
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 1.0e-129 467.6 401 58.4
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 1.2e-128 464.2 405 59.3
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 4.4e-128 462.2 399 59.4
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 2.8e-127 459.5 432 54.9
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.1e-126 457.6 377 62.1
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 1.4e-126 457.2 447 55.0
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 2.4e-126 456.4 432 54.4
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 1.1e-123 447.6 403 56.8
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 4.0e-121 439.1 385 59.7
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 3.4e-120 436.0 430 53.3
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.0e-116 424.5 442 54.5
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 5.4e-110 402.1 401 53.9
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 4.6e-109 399.1 286 70.6
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 1.5e-107 394.0 369 55.6
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 5.2e-105 385.6 403 51.1
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.3e-103 380.9 402 53.2
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 3.2e-102 376.3 349 55.6
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 1.6e-101 374.0 408 48.5
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 3.9e-100 369.4 279 65.6
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 4.6e-93 345.9 421 45.8
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 1.1e-91 341.3 348 51.1
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.4e-89 333.6 410 46.6
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 1.2e-88 331.3 290 58.6
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 1.1e-81 308.1 315 54.9
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.1e-78 298.1 280 56.8
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 7.9e-77 292.0 336 46.7
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 1.3e-76 291.2 262 58.8
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 5.5e-62 242.7 177 65.5
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 3.3e-59 233.4 244 50.4
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.4e-57 227.3 299 44.5
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.1e-57 226.9 363 39.4
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 1.2e-56 224.9 433 36.3
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 2.6e-56 223.8 414 35.5
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.1e-49 199.9 153 63.4
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 5.3e-49 199.5 220 50.0
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 3.4e-48 196.8 185 55.7
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.9e-48 196.1 150 63.3
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.5e-46 190.7 142 64.1
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 2.7e-45 187.2 135 66.7
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 8.2e-42 175.6 246 41.9
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 4.4e-35 153.3 273 37.4
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 2.6e-32 144.1 113 60.2
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.5e-31 139.4 116 60.3
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 7.2e-30 136.0 113 60.2
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 4.5e-24 116.7 119 47.9
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.5e-22 110.9 134 42.5
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 1.2e-16 92.0 64 68.8
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 1.8e-12 78.2 350 28.3
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.2e-11 75.5 351 25.9
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 1.5e-11 75.1 351 22.5
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 2.0e-11 74.7 350 25.4
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 2.6e-11 74.3 357 23.8
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 3.4e-11 73.9 353 22.9
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 9.8e-11 72.4 355 23.1
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 4.9e-10 70.1 350 23.7
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 6.4e-10 69.7 340 24.7
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 8.3e-10 69.3 67 53.7
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 1.4e-09 68.6 352 23.9
Actinidia37455 Actinidia chinensis HOM05D006855 ORTHO05D055804 5.6e-06 56.6 42 59.5


User provided reference genes

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