Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 0.0e+00 1147.1 648 100.0
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 4.0e-287 991.1 649 86.4
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 5.8e-278 960.7 646 82.8
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 6.0e-251 870.9 649 77.7
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 3.3e-249 865.1 650 76.6
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.3e-245 853.2 660 76.2
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 7.4e-209 731.1 652 64.7
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 2.8e-208 729.2 641 66.0
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.5e-204 716.8 660 64.8
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.3e-202 709.5 650 66.0
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 4.0e-202 708.8 641 65.8
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 6.3e-200 701.4 678 61.5
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 3.1e-199 699.1 647 62.4
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 3.2e-196 689.1 665 59.5
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 6.1e-195 684.9 649 62.1
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 4.0e-186 655.6 650 58.3
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 2.0e-185 653.3 637 62.6
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.0e-185 653.3 657 57.4
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.6e-185 652.9 657 62.6
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 1.4e-183 647.1 655 55.7
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 2.9e-181 639.4 633 59.2
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 1.8e-178 630.2 647 57.3
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 4.9e-176 622.1 652 60.1
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 5.4e-175 618.6 655 57.3
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 3.0e-173 612.8 636 60.5
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 4.7e-171 605.5 662 55.9
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 8.0e-171 604.7 635 57.6
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 1.4e-170 604.0 650 55.5
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 1.3e-168 597.4 652 58.6
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 1.7e-168 597.0 632 57.6
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 2.2e-168 596.7 643 57.5
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 1.4e-167 594.0 673 55.6
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 1.9e-167 593.6 645 57.5
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 5.4e-167 592.0 605 61.0
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.0e-167 591.7 635 55.9
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 7.0e-167 591.7 654 56.7
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 3.5e-166 589.3 635 56.1
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 1.0e-165 587.8 646 56.3
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.1e-163 580.1 635 55.0
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.3e-162 576.6 653 53.8
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 2.0e-161 573.5 654 53.4
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 4.4e-161 572.4 627 55.3
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 8.3e-160 568.2 642 57.5
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 2.3e-157 560.1 650 57.5
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 8.6e-157 558.1 637 50.9
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 3.6e-155 552.7 643 53.3
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.8e-154 550.4 653 50.2
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 8.9e-154 548.1 618 56.5
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 1.5e-153 547.4 547 61.4
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 9.9e-153 544.7 576 60.1
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 2.9e-152 543.1 652 54.8
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 1.1e-151 541.2 665 52.3
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 7.8e-150 535.0 650 54.0
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 2.1e-147 526.9 664 51.7
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 3.2e-143 513.1 647 53.5
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 5.4e-143 512.3 630 54.4
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 1.6e-142 510.8 635 53.2
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 2.1e-142 510.4 648 50.2
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 6.0e-142 508.8 674 52.8
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 1.3e-141 507.7 645 52.2
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 5.1e-141 505.8 636 51.3
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 5.6e-140 502.3 649 51.5
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 4.0e-138 496.1 652 49.8
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 9.0e-138 495.0 651 49.8
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.4e-137 493.0 653 46.4
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 7.6e-137 491.9 640 50.9
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 4.9e-136 489.2 637 51.6
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 6.4e-136 488.8 673 48.0
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.2e-135 486.5 704 47.4
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 6.0e-134 482.3 635 49.9
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 1.0e-133 481.5 651 48.1
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 8.7e-133 478.4 661 48.4
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 4.3e-132 476.1 653 46.7
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 9.6e-132 474.9 659 47.0
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 2.4e-130 470.3 635 49.4
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 2.0e-129 467.2 646 50.6
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 2.0e-129 467.2 492 58.3
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 9.9e-129 464.9 653 49.3
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 1.9e-127 460.7 655 48.7
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 1.9e-127 460.7 653 48.1
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.8e-125 454.1 670 46.7
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 7.4e-124 448.7 672 49.6
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 3.7e-123 446.4 327 70.9
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 2.0e-121 440.7 659 44.9
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 4.2e-119 433.0 575 46.8
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.3e-117 427.9 552 48.4
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 6.7e-117 425.6 638 45.1
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 6.3e-115 419.1 662 46.5
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 5.5e-111 406.0 504 54.2
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 2.6e-105 387.1 671 38.7
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 3.8e-104 383.3 358 55.9
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 4.2e-103 379.8 449 54.1
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 1.5e-100 371.3 635 43.6
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 5.7e-100 369.4 338 57.1
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 1.4e-98 364.8 311 59.8
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 3.4e-97 360.1 638 44.7
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 4.7e-94 349.7 276 63.4
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.7e-91 340.1 653 38.1
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 8.5e-88 328.9 539 44.3
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 1.9e-87 327.8 439 47.6
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.7e-86 323.2 556 42.6
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 1.8e-85 321.2 558 43.7
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 3.3e-84 317.0 290 58.3
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 2.2e-83 314.3 232 68.1
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 2.4e-82 310.8 275 57.1
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 2.0e-76 291.2 633 36.8
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 4.5e-73 280.0 253 58.1
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.3e-72 278.5 259 56.0
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 4.7e-70 270.0 624 37.2
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.4e-69 268.5 370 55.9
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 8.3e-67 259.2 649 30.2
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.1e-66 258.8 605 33.4
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.6e-65 255.0 394 48.0
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.7e-64 251.5 308 47.7
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.8e-64 250.4 260 53.8
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.5e-63 247.7 480 41.2
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 2.8e-62 244.2 268 53.4
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 2.3e-61 241.1 291 50.5
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 8.3e-59 232.6 702 34.2
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.9e-56 223.8 256 50.4
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.4e-53 215.3 237 51.1
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.4e-52 210.7 432 42.8
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 2.4e-50 204.5 181 53.0
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.2e-49 202.2 148 66.9
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 3.3e-47 194.1 181 53.6
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 6.8e-45 186.4 230 47.0
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.2e-41 175.6 396 43.7
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 4.0e-37 160.6 148 54.1
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 1.3e-35 155.6 110 63.6
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 4.2e-34 150.6 119 62.2
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 7.1e-34 149.8 169 40.8
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 1.2e-33 149.1 184 53.8
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 3.0e-32 144.4 186 43.5
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 6.6e-32 143.3 264 30.7
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 8.7e-32 142.9 249 39.4
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 9.6e-31 139.4 202 40.6
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 2.8e-30 137.9 307 31.9
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.4e-29 134.8 210 39.5
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.2e-28 132.5 123 53.7
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.5e-28 132.1 142 54.9
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.6e-28 131.3 100 66.0
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 9.9e-28 129.4 205 38.0
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 1.7e-27 128.6 206 38.3
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 2.2e-27 128.3 216 38.9
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 8.4e-27 126.3 199 39.2
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 8.4e-27 126.3 199 39.2
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 1.4e-26 125.6 290 33.1
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 7.1e-26 123.2 163 44.8
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 7.1e-26 123.2 89 61.8
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.2e-25 122.5 264 40.9
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 1.6e-25 122.1 170 39.4
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 2.7e-25 121.3 196 35.2
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 6.0e-25 120.2 500 26.8
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 3.3e-23 114.4 294 31.6
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 4.3e-23 114.0 487 32.2
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 2.8e-22 111.3 156 39.7
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 4.8e-22 110.5 78 67.9
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 1.2e-20 105.9 183 37.2
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 7.1e-18 96.7 80 57.5
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 7.1e-18 96.7 200 37.0
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.1e-17 95.1 117 44.4
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 2.7e-17 94.7 119 43.7
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 7.9e-17 93.2 73 67.1
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 5.6e-15 87.0 286 28.7
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 2.8e-14 84.7 245 37.6
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 8.1e-14 83.2 158 38.6
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.0e-13 80.9 171 34.5
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 9.0e-13 79.7 49 79.6
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 3.4e-12 77.8 150 35.3
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 7.6e-12 76.6 77 48.1
QL93p0107_0801 Quercus lobata HOM05D003570 ORTHO05D004207 1.1e-10 72.8 142 38.0
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.4e-10 72.4 74 52.7
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 5.5e-10 70.5 49 67.3
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 2.7e-09 68.2 70 48.6
CDE06G1606 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 3.5e-09 67.8 103 37.9
BcaC02g12092 Brassica carinata HOM05D003570 ORTHO05D004207 6.0e-09 67.0 57 52.6
BolC4t26886H Brassica oleracea HOM05D003570 ORTHO05D004207 1.8e-08 65.5 51 56.9
C03p39130 Brassica napus HOM05D003570 ORTHO05D004207 3.0e-08 64.7 106 35.8
CAN.G149.33 Capsicum annuum HOM05D001546 ORTHO05D015824 1.5e-07 62.4 74 45.9
Hund04894 Selenicereus undatus HOM05D003570 ORTHO05D004207 4.3e-07 60.8 68 45.6
Solyc04g026000.2 Solanum lycopersicum HOM05D003570 ORTHO05D004207 4.3e-07 60.8 127 33.1
CAN.G294.19 Capsicum annuum HOM05D003570 ORTHO05D004207 3.7e-06 57.8 44 68.2


User provided reference genes

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