Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 3.9e-59 233.4 257 100.0
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 4.6e-44 183.3 257 71.6
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.3e-43 181.0 257 63.4
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 1.1e-32 145.6 223 95.1
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 9.0e-32 142.5 257 82.5
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 7.6e-31 139.4 257 60.3
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 3.8e-30 137.1 257 58.4
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 6.5e-30 136.3 257 68.9
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 2.7e-28 131.0 257 53.7
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 3.9e-27 127.1 257 54.5
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 6.3e-25 119.8 257 79.0
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 1.1e-24 119.0 257 77.8
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 1.4e-24 118.6 81 70.4
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 2.4e-24 117.9 249 78.3
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 3.1e-24 117.5 80 70.0
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 9.0e-24 115.9 257 76.3
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 1.2e-23 115.5 82 67.1
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 1.2e-23 115.5 82 67.1
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 1.5e-23 115.2 81 66.7
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.5e-23 115.2 223 36.8
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 2.0e-23 114.8 80 62.5
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 2.6e-23 114.4 81 65.4
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 1.0e-22 112.5 81 67.9
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 2.2e-22 111.3 79 67.1
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 3.8e-22 110.5 77 64.9
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 6.5e-22 109.8 79 67.1
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 6.5e-22 109.8 254 77.6
Gohir.D02G157000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 8.5e-22 109.4 56 92.9
Gorai.005G176400 Gossypium raimondii HOM05D007686 ORTHO05D009709 1.1e-21 109.0 230 53.0
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 3.2e-21 107.5 79 67.1
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 4.2e-21 107.1 81 59.3
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 1.2e-20 105.5 82 62.2
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 1.6e-20 105.1 82 61.0
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 2.1e-20 104.8 79 65.8
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 2.1e-20 104.8 82 61.0
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 7.9e-20 102.8 83 63.9
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 1.4e-19 102.1 80 58.8
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 5.1e-19 100.1 75 62.7
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 3.3e-18 97.4 77 62.3
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 3.3e-18 97.4 67 68.7
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 3.3e-18 97.4 67 68.7
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 5.7e-18 96.7 82 57.3
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 1.3e-17 95.5 68 63.2
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 3.7e-17 94.0 62 69.4
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 6.3e-17 93.2 62 72.6
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 1.4e-16 92.0 62 67.7
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 3.1e-16 90.9 86 55.8
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 3.1e-16 90.9 71 60.6
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 9.1e-16 89.4 73 60.3
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 1.5e-15 88.6 67 61.2
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 7.7e-15 86.3 66 59.1
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 7.7e-15 86.3 59 67.8
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 1.3e-14 85.5 66 62.1
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 1.3e-14 85.5 60 66.7
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 1.3e-14 85.5 66 62.1
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 1.7e-14 85.1 54 70.4
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 1.7e-14 85.1 54 70.4
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 5.0e-14 83.6 256 72.7
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 1.1e-13 82.4 81 55.6
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 1.4e-13 82.0 59 62.7
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 2.5e-13 81.3 59 64.4
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 7.2e-13 79.7 256 71.9
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 9.4e-13 79.3 53 67.9
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 1.6e-12 78.6 55 63.6
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 2.1e-12 78.2 256 71.5
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 2.1e-12 78.2 223 67.7
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 3.6e-12 77.4 55 61.8
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 3.6e-12 77.4 55 61.8
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 3.6e-12 77.4 55 61.8
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 3.6e-12 77.4 55 61.8
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 3.6e-12 77.4 55 61.8
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 4.7e-12 77.0 62 61.3
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 6.1e-12 76.6 55 61.8
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 6.1e-12 76.6 55 61.8
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 2.3e-11 74.7 255 71.4
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 3.9e-11 73.9 73 46.6
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 6.7e-11 73.2 51 62.7
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 6.7e-11 73.2 51 62.7
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 8.8e-11 72.8 73 49.3
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 4.4e-10 70.5 53 60.4
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 5.7e-10 70.1 51 58.8
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 7.4e-10 69.7 50 62.0
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 7.4e-10 69.7 47 70.2
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 2.8e-09 67.8 52 59.6
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 8.2e-09 66.2 47 59.6
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 3.1e-08 64.3 53 54.7
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 5.3e-08 63.5 56 55.4
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 2.0e-07 61.6 45 55.6
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 3.5e-07 60.8 40 67.5
CAN.G941.2 Capsicum annuum HOM05D007686 ORTHO05D009709 5.9e-07 60.1 164 28.0
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 1.7e-06 58.5 47 59.6
SEGI_18114 Sequoiadendron giganteum HOM05D007686 ORTHO05D009709 5.0e-06 57.0 55 50.9
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 6.5e-06 56.6 45 60.0


User provided reference genes

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