Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 0.0e+00 1228.8 641 100.0
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 3.0e-255 885.2 634 75.2
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.7e-251 872.1 634 73.8
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.2e-246 856.7 667 70.2
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 3.0e-242 842.0 636 72.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.1e-241 840.1 634 72.1
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 2.6e-166 589.7 646 53.6
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 6.3e-160 568.5 708 50.7
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 6.8e-154 548.5 657 53.1
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 8.3e-152 541.6 640 52.3
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 8.3e-152 541.6 673 49.5
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 5.4e-151 538.9 643 51.6
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.6e-150 537.3 665 49.8
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.1e-148 531.2 666 49.5
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.4e-146 524.2 713 47.7
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 5.2e-146 522.3 682 49.3
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 6.8e-146 521.9 640 50.2
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.2e-142 511.1 674 48.2
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.0e-141 508.1 689 46.9
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.0e-141 508.1 669 47.8
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.6e-139 500.7 684 48.1
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 2.1e-139 500.4 631 49.9
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.8e-138 497.3 688 46.1
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.1e-138 496.5 691 46.2
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 7.5e-137 491.9 686 45.9
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 4.9e-136 489.2 650 48.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.1e-135 488.0 674 46.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.4e-135 487.6 664 48.0
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.0e-134 483.8 644 47.4
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 2.3e-133 480.3 702 44.7
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 9.5e-132 474.9 646 47.7
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.6e-131 474.2 649 47.0
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 2.8e-131 473.4 651 46.5
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 8.0e-131 471.9 534 51.9
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.4e-130 471.1 723 43.6
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 2.0e-129 467.2 666 46.2
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.3e-128 464.5 686 43.7
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 8.3e-128 461.8 582 49.3
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.9e-127 460.7 671 45.5
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 8.6e-125 451.8 696 43.8
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.5e-124 451.1 712 42.8
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.3e-124 449.5 666 44.6
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.6e-123 447.6 685 44.4
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 4.0e-122 443.0 654 45.7
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 8.9e-122 441.8 703 44.0
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.7e-120 437.6 666 45.2
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 5.4e-119 432.6 676 44.1
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 7.8e-118 428.7 689 43.4
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 1.7e-117 427.6 651 43.5
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 3.9e-117 426.4 723 42.3
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 7.3e-116 422.2 663 44.0
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.8e-115 420.2 674 45.4
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.2e-112 410.6 654 41.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 2.1e-110 404.1 672 41.8
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 4.6e-110 402.9 710 41.1
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.1e-108 398.3 657 41.2
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 3.3e-108 396.7 735 40.3
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.6e-108 396.0 713 39.7
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.6e-107 394.4 644 41.3
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.0e-106 389.8 708 40.4
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 3.4e-105 386.7 700 40.1
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 7.6e-105 385.6 651 40.9
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 9.9e-105 385.2 794 38.2
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 6.4e-104 382.5 665 41.5
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 4.2e-103 379.8 639 40.5
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.2e-102 378.3 642 40.3
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.2e-102 378.3 642 40.3
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.2e-102 378.3 646 39.0
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.7e-101 374.4 674 40.7
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 8.7e-101 372.1 658 41.3
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.1e-100 371.7 642 40.0
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 5.6e-100 369.4 814 35.4
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 9.6e-100 368.6 653 40.0
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.1e-98 365.2 643 39.2
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-98 364.4 654 41.0
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.0e-98 363.2 739 37.6
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 2.0e-97 360.9 645 38.4
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.0e-97 360.9 644 39.9
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.6e-97 360.5 642 40.2
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 3.8e-96 356.7 648 39.5
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 9.3e-95 352.1 646 38.4
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.1e-94 350.9 806 34.9
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 6.7e-93 345.9 581 41.0
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 7.4e-92 342.4 762 36.2
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 4.0e-90 336.7 538 42.8
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 5.8e-89 332.8 540 44.6
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 8.4e-88 328.9 655 37.9
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-87 327.4 653 37.5
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.5e-87 326.2 731 34.9
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 9.3e-87 325.5 657 37.7
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 3.5e-86 323.6 684 36.8
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 6.0e-86 322.8 746 35.5
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 6.7e-85 319.3 640 35.9
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-84 318.5 652 37.4
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.9e-84 317.8 662 38.1
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 2.5e-84 317.4 681 38.6
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.5e-84 317.4 856 32.5
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 6.2e-83 312.8 831 33.7
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 8.2e-83 312.4 860 32.4
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 6.9e-82 309.3 630 38.7
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.2e-81 308.5 749 35.2
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 1.5e-81 308.1 647 35.1
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.0e-81 307.8 884 32.8
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.7e-80 304.7 679 36.5
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.2e-78 298.5 606 39.6
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 2.7e-78 297.4 710 35.6
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.4e-74 285.0 624 36.4
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.1e-74 283.9 898 29.4
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 3.4e-73 280.4 623 38.5
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.3e-72 278.5 669 34.7
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 5.0e-72 276.6 694 33.7
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.4e-71 275.0 691 34.0
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 3.0e-69 267.3 626 36.6
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 3.0e-69 267.3 682 33.0
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.1e-66 257.3 623 33.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 2.0e-65 254.6 559 36.1
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 2.2e-64 251.1 626 33.2
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 6.7e-61 239.6 616 32.5
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.8e-59 233.4 825 29.9
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 3.2e-55 220.7 633 34.4
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 5.2e-53 213.4 633 33.5
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 8.8e-53 212.6 592 34.0
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 5.3e-50 203.4 628 31.1
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.9e-48 197.6 304 46.1
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 5.0e-48 196.8 315 44.1
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.2e-47 193.7 171 61.4
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 9.4e-47 192.6 585 33.0
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 9.4e-47 192.6 833 27.7
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.7e-46 191.0 430 36.3
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 3.1e-42 177.6 414 37.4
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 5.9e-41 173.3 492 33.1
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 7.7e-41 172.9 347 39.2
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 3.8e-40 170.6 218 46.3
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.5e-39 168.7 674 27.9
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 2.1e-38 164.9 257 41.2
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 3.0e-37 161.0 175 53.7
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.4e-36 157.5 156 50.6
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 2.8e-35 154.5 783 27.8
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 4.1e-34 150.6 594 28.8
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 1.2e-33 149.1 282 40.1
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 9.5e-31 139.4 359 35.9
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.2e-30 139.0 350 34.6
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 2.1e-30 138.3 345 35.7
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 4.7e-30 137.1 356 34.6
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.0e-29 136.0 324 35.8
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.3e-27 129.0 183 45.9
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 7.8e-25 119.8 112 53.6
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 8.0e-22 109.8 167 41.3
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.4e-21 109.0 424 30.0
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.2e-20 105.9 661 24.4
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 9.8e-20 102.8 112 55.4
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 6.4e-19 100.1 164 35.4
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.4e-18 99.0 83 54.2
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.4e-18 98.2 527 26.6
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 7.8e-17 93.2 121 43.8
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.3e-16 91.7 78 65.4
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 1.1e-15 89.4 179 39.7
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 7.3e-15 86.7 60 65.0
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.1e-14 85.1 187 38.0
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 8.1e-14 83.2 262 34.0
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.4e-13 82.4 187 37.4
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.0e-13 80.9 515 25.6
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 5.8e-12 77.0 90 47.8
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 7.1e-10 70.1 85 44.7
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 2.1e-09 68.6 85 47.1
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.3e-08 65.9 80 42.5
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 5.1e-08 63.9 98 44.9
Sc02g0003070 Simmondsia chinensis HOM05D004112 ORTHO05D004739 7.3e-07 60.1 390 26.4
BolC2t12020H Brassica oleracea HOM05D004112 ORTHO05D004739 4.7e-06 57.4 166 31.3
Lj2C1008G14 Lonicera japonica HOM05D004112 ORTHO05D004739 4.7e-06 57.4 236 29.2
SHI17827 Sapria himalayana HOM05D004112 ORTHO05D004739 4.7e-06 57.4 67 43.3


User provided reference genes

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