Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 1.2e-50 203.0 111 100.0
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 9.3e-43 176.8 111 84.7
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 9.0e-38 160.2 111 80.2
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 3.4e-37 158.3 111 78.4
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 4.5e-37 157.9 109 80.7
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 4.2e-35 151.4 112 75.0
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 5.1e-33 144.4 111 70.3
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 1.5e-32 142.9 111 69.4
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 1.9e-32 142.5 114 70.2
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 3.3e-32 141.7 111 73.0
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 4.3e-32 141.4 111 74.8
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 5.6e-32 141.0 111 72.1
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 9.6e-32 140.2 111 72.1
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 1.3e-31 139.8 114 67.5
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 6.2e-31 137.5 111 67.6
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 6.2e-31 137.5 111 68.5
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 2.4e-30 135.6 113 70.8
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 3.1e-30 135.2 110 69.1
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 4.0e-30 134.8 112 69.6
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 5.3e-30 134.4 112 69.6
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 5.3e-30 134.4 106 71.7
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 5.3e-30 134.4 110 71.8
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 9.0e-30 133.7 108 72.2
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 1.2e-29 133.3 111 68.5
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 2.6e-29 132.1 107 67.3
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 2.6e-29 132.1 110 65.5
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 3.4e-29 131.7 96 77.1
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 3.4e-29 131.7 111 64.9
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 4.5e-29 131.3 83 81.9
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 4.5e-29 131.3 85 82.4
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 4.5e-29 131.3 83 84.3
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 1.3e-28 129.8 108 64.8
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 2.2e-28 129.0 89 78.7
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 2.9e-28 128.6 108 66.7
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 2.9e-28 128.6 80 85.0
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 3.8e-28 128.3 111 65.8
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 4.9e-28 127.9 113 65.5
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 4.9e-28 127.9 107 66.4
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 6.4e-28 127.5 110 64.5
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 8.4e-28 127.1 107 66.4
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 8.4e-28 127.1 110 68.2
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 1.1e-27 126.7 108 66.7
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 1.1e-27 126.7 115 64.3
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 1.1e-27 126.7 113 64.6
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 1.4e-27 126.3 113 69.9
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 1.4e-27 126.3 112 67.9
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 1.4e-27 126.3 113 62.8
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 3.2e-27 125.2 82 79.3
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 3.2e-27 125.2 103 68.0
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 4.2e-27 124.8 113 62.8
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 5.5e-27 124.4 112 67.0
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 7.1e-27 124.0 109 61.5
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 7.1e-27 124.0 111 63.1
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 7.1e-27 124.0 111 63.1
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 7.1e-27 124.0 112 65.2
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 7.1e-27 124.0 112 65.2
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 9.3e-27 123.6 108 63.0
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 1.6e-26 122.9 111 63.1
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 2.1e-26 122.5 99 66.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 2.1e-26 122.5 107 62.6
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 2.1e-26 122.5 111 63.1
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 2.7e-26 122.1 79 81.0
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 2.7e-26 122.1 78 87.2
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 3.5e-26 121.7 108 62.0
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.5e-26 121.7 106 66.0
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 6.0e-26 120.9 114 63.2
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 1.0e-25 120.2 107 62.6
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 1.3e-25 119.8 108 62.0
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 1.3e-25 119.8 108 62.0
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 1.3e-25 119.8 108 62.0
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 1.3e-25 119.8 102 65.7
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 1.3e-25 119.8 114 63.2
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 1.8e-25 119.4 111 61.3
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 2.3e-25 119.0 111 60.4
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 3.0e-25 118.6 111 61.3
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 3.0e-25 118.6 109 59.6
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 3.9e-25 118.2 113 60.2
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 3.9e-25 118.2 82 74.4
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 3.9e-25 118.2 114 59.6
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 3.9e-25 118.2 119 58.0
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 5.1e-25 117.9 113 60.2
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 5.1e-25 117.9 111 62.2
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 5.1e-25 117.9 106 66.0
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 6.7e-25 117.5 107 65.4
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 6.7e-25 117.5 108 59.3
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 8.7e-25 117.1 77 77.9
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 8.7e-25 117.1 108 61.1
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 8.7e-25 117.1 108 63.0
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 8.7e-25 117.1 108 61.1
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 8.7e-25 117.1 109 57.8
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 8.7e-25 117.1 111 61.3
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 8.7e-25 117.1 112 58.9
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 1.1e-24 116.7 111 59.5
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 1.1e-24 116.7 108 62.0
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 1.1e-24 116.7 111 59.5
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 1.1e-24 116.7 107 59.8
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 1.1e-24 116.7 111 63.1
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 1.5e-24 116.3 106 63.2
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 1.5e-24 116.3 79 77.2
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 1.9e-24 115.9 110 61.8
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 1.9e-24 115.9 80 76.2
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 2.5e-24 115.5 108 60.2
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 7.4e-24 114.0 111 59.5
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 7.4e-24 114.0 108 60.2
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 7.4e-24 114.0 110 56.4
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 7.4e-24 114.0 113 59.3
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-23 112.8 81 74.1
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-23 112.8 81 74.1
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-23 112.8 81 74.1
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-23 112.8 81 74.1
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-23 112.8 81 74.1
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-23 112.8 81 74.1
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-23 112.8 81 74.1
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 2.8e-23 112.1 111 62.2
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 3.7e-23 111.7 111 58.6
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 3.7e-23 111.7 110 60.0
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 4.8e-23 111.3 111 60.4
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 8.2e-23 110.5 78 74.4
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 8.2e-23 110.5 110 54.5
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.1e-22 110.2 80 72.5
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.1e-22 110.2 81 72.8
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 3.1e-22 108.6 113 56.6
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 4.0e-22 108.2 115 58.3
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 1.2e-21 106.7 81 67.9
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 2.6e-21 105.5 80 70.0
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 1.7e-20 102.8 109 58.7
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 2.2e-20 102.4 81 66.7
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 3.8e-20 101.7 109 54.1
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 4.9e-20 101.3 109 57.8
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 3.5e-18 95.1 87 63.2
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 6.0e-18 94.4 115 53.9
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 3.9e-17 91.7 96 55.2
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 5.1e-17 91.3 90 58.9
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 8.7e-17 90.5 73 67.1
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 1.4e-14 83.2 83 60.2
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 1.4e-11 73.2 80 55.0
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 7.9e-10 67.4 53 67.9
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 5.1e-09 64.7 57 63.2
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.1e-08 63.5 60 60.0
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 1.5e-08 63.2 46 69.6
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.7e-07 59.7 41 75.6


User provided reference genes

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