Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 7.3e-63 243.8 131 100.0
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 3.8e-35 151.8 97 85.6
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 5.1e-32 141.4 97 83.5
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 1.2e-28 130.2 99 75.8
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 1.2e-28 130.2 99 75.8
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 3.4e-28 128.6 99 74.7
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 3.3e-23 112.1 90 74.4
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 4.0e-21 105.1 96 59.4
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 5.3e-21 104.8 93 65.6
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 4.5e-20 101.7 138 47.8
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 1.7e-19 99.8 95 61.1
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 1.1e-18 97.1 95 57.9
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 1.1e-18 97.1 97 58.8
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 1.4e-18 96.7 87 57.5
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 2.5e-18 95.9 96 57.3
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 4.2e-18 95.1 96 55.2
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 4.2e-18 95.1 90 57.8
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 5.5e-18 94.7 95 56.8
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 9.3e-18 94.0 97 55.7
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 1.2e-17 93.6 92 63.0
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 1.2e-17 93.6 96 58.3
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 1.2e-17 93.6 96 55.2
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 1.6e-17 93.2 85 57.6
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 2.7e-17 92.4 93 55.9
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 3.5e-17 92.0 89 57.3
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 4.6e-17 91.7 92 58.7
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 6.0e-17 91.3 93 57.0
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 7.9e-17 90.9 80 58.8
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 1.3e-16 90.1 102 52.0
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 1.8e-16 89.7 94 57.4
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 3.0e-16 89.0 88 55.7
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 3.0e-16 89.0 90 58.9
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 3.9e-16 88.6 91 59.3
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 5.1e-16 88.2 89 59.6
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 5.1e-16 88.2 98 56.1
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 1.9e-15 86.3 77 61.0
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 4.3e-15 85.1 56 76.8
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 5.7e-15 84.7 95 54.7
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 1.6e-14 83.2 82 56.1
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 2.8e-14 82.4 76 57.9
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 4.8e-14 81.6 93 50.5
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 2.4e-13 79.3 51 68.6
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 2.4e-13 79.3 68 60.3
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 3.1e-13 79.0 77 57.1
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 4.1e-13 78.6 97 52.6
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 4.1e-13 78.6 68 61.8
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 5.3e-13 78.2 69 59.4
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 6.9e-13 77.8 68 63.2
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 6.9e-13 77.8 78 55.1
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 6.9e-13 77.8 91 52.7
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 9.0e-13 77.4 74 55.4
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 1.2e-12 77.0 68 69.1
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 2.0e-12 76.3 91 50.5
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 3.4e-12 75.5 86 57.0
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 3.4e-12 75.5 86 54.7
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 3.4e-12 75.5 42 78.6
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 3.4e-12 75.5 90 54.4
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 4.5e-12 75.1 53 67.9
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 4.5e-12 75.1 69 58.0
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 4.5e-12 75.1 69 58.0
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 4.5e-12 75.1 63 57.1
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 4.5e-12 75.1 89 52.8
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 5.9e-12 74.7 110 45.5
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 7.6e-12 74.3 131 40.5
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 7.6e-12 74.3 93 48.4
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 7.6e-12 74.3 104 44.2
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 1.3e-11 73.6 68 52.9
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.3e-11 73.6 59 59.3
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 1.7e-11 73.2 126 39.7
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 1.7e-11 73.2 126 39.7
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 1.7e-11 73.2 126 39.7
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 1.7e-11 73.2 126 39.7
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 1.7e-11 73.2 126 39.7
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 1.7e-11 73.2 46 73.9
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 1.7e-11 73.2 83 53.0
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 1.7e-11 73.2 84 51.2
Duzib268G0416 Durio zibethinus HOM05D007247 ORTHO05D009208 2.9e-11 72.4 61 70.5
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 3.8e-11 72.0 99 44.4
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 5.0e-11 71.6 47 76.6
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 5.0e-11 71.6 85 49.4
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 6.5e-11 71.2 117 43.6
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 8.4e-11 70.9 56 69.6
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 8.4e-11 70.9 56 69.6
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 1.1e-10 70.5 63 61.9
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 1.1e-10 70.5 75 61.3
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.1e-10 70.5 61 60.7
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 1.4e-10 70.1 84 48.8
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 1.9e-10 69.7 80 47.5
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 9.3e-10 67.4 39 79.5
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 1.2e-09 67.0 86 46.5
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 1.2e-09 67.0 102 44.1
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.6e-09 66.6 80 46.2
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 1.6e-09 66.6 73 47.9
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 2.1e-09 66.2 60 56.7
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 3.5e-09 65.5 67 50.7
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 4.6e-09 65.1 60 53.3
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 2.3e-08 62.8 46 69.6
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 3.3e-07 58.9 42 69.0
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 3.3e-07 58.9 55 50.9
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 3.3e-07 58.9 101 41.6
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 7.4e-07 57.8 95 38.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 1.3e-06 57.0 96 38.5
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.3e-06 57.0 49 61.2
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 2.2e-06 56.2 71 49.3
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 2.2e-06 56.2 62 46.8
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.2e-06 56.2 62 46.8
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.2e-06 56.2 62 46.8
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.2e-06 56.2 62 46.8
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.2e-06 56.2 62 46.8
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 2.2e-06 56.2 37 70.3
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 2.2e-06 56.2 58 51.7
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 2.8e-06 55.8 58 60.3
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 2.8e-06 55.8 44 65.9
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 2.8e-06 55.8 50 52.0
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.7e-06 55.5 62 46.8
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 6.3e-06 54.7 66 51.5
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 6.3e-06 54.7 43 67.4
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 6.3e-06 54.7 43 67.4
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 6.3e-06 54.7 43 67.4
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 6.3e-06 54.7 44 54.5
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 8.2e-06 54.3 41 70.7
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 8.2e-06 54.3 41 70.7
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 8.2e-06 54.3 100 39.0
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 8.2e-06 54.3 64 54.7


User provided reference genes

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