Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 4.8e-146 521.5 350 100.0
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 1.7e-130 469.9 353 87.0
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.1e-129 467.2 353 92.4
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.8e-129 466.5 353 86.7
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 9.2e-129 464.2 350 76.0
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 1.8e-124 449.9 350 70.0
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 4.9e-122 441.8 350 81.7
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 6.6e-119 431.4 351 78.6
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 4.0e-116 422.2 353 71.4
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 1.3e-114 417.2 353 69.1
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 1.7e-114 416.8 353 69.1
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 1.4e-113 413.7 351 65.0
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 1.0e-111 407.5 352 75.9
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 2.3e-111 406.4 349 73.6
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 6.6e-111 404.8 357 74.8
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 8.6e-111 404.4 351 75.5
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 3.1e-108 396.0 352 63.9
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 2.6e-107 392.9 355 72.1
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 3.4e-107 392.5 355 69.0
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 7.5e-107 391.3 355 65.1
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 9.9e-107 391.0 355 63.4
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 9.9e-107 391.0 355 65.4
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 2.2e-106 389.8 357 65.0
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 3.7e-106 389.0 355 69.0
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 6.4e-106 388.3 355 65.9
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 1.9e-105 386.7 361 80.6
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 4.1e-105 385.6 353 70.0
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 4.1e-105 385.6 356 64.0
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 7.1e-105 384.8 357 62.7
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 7.1e-105 384.8 357 63.6
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 7.1e-105 384.8 357 63.6
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 1.2e-104 384.0 357 65.0
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 1.2e-104 384.0 357 65.0
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 1.2e-104 384.0 356 64.6
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.6e-104 383.6 360 65.3
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 1.3e-103 380.6 357 66.4
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 3.9e-103 379.0 354 65.8
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 5.1e-103 378.6 351 73.2
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 2.5e-102 376.3 356 66.0
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.5e-102 376.3 360 63.6
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 7.3e-102 374.8 357 70.0
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 1.2e-101 374.0 372 64.8
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.6e-101 373.6 351 67.8
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 1.6e-101 373.6 360 63.1
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.6e-101 373.6 360 63.1
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 1.6e-101 373.6 406 62.1
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 2.1e-101 373.2 354 69.2
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 6.2e-101 371.7 360 63.1
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 1.5e-99 367.1 352 65.3
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 3.4e-99 365.9 352 65.1
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 4.4e-99 365.5 377 60.7
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 9.9e-99 364.4 357 58.8
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 9.9e-99 364.4 354 62.4
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 2.2e-98 363.2 360 61.9
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 2.9e-98 362.8 351 65.5
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 8.4e-98 361.3 354 64.4
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 4.2e-97 359.0 353 60.9
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 2.7e-96 356.3 353 58.9
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 2.7e-96 356.3 361 57.1
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 3.5e-96 355.9 363 68.0
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 7.8e-96 354.8 361 66.2
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 2.3e-95 353.2 354 65.5
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 8.7e-95 351.3 358 56.7
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 3.3e-94 349.4 353 68.8
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 2.1e-93 346.7 359 61.3
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 1.4e-92 344.0 192 88.0
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.4e-92 343.2 361 65.4
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 5.3e-92 342.0 193 88.1
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 9.0e-92 341.3 353 61.8
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 1.2e-91 340.9 364 66.8
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 4.4e-91 339.0 351 60.4
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 7.6e-91 338.2 195 86.7
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 1.3e-90 337.4 194 86.6
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 6.4e-90 335.1 360 68.1
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 1.4e-89 334.0 351 58.7
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 4.2e-89 332.4 351 59.0
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 7.1e-89 331.6 193 85.5
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 4.6e-88 328.9 354 59.6
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 1.3e-87 327.4 363 62.5
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 3.0e-87 326.2 194 82.0
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 7.3e-86 321.6 334 59.6
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 1.3e-85 320.9 194 82.0
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.3e-85 320.9 194 83.0
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 2.8e-85 319.7 367 67.6
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 4.8e-85 318.9 194 81.4
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 6.9e-84 315.1 194 77.8
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 2.0e-83 313.5 356 55.3
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 2.6e-83 313.2 194 79.9
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 2.6e-83 313.2 192 81.8
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 3.4e-83 312.8 194 77.3
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 8.4e-82 308.1 391 63.9
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 4.2e-81 305.8 194 78.4
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 3.5e-80 302.8 431 51.0
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 1.4e-76 290.8 196 74.5
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 2.2e-74 283.5 289 68.2
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 1.4e-73 280.8 195 70.3
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 3.2e-73 279.6 282 68.8
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 2.1e-72 276.9 329 56.8
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 6.0e-72 275.4 284 82.0
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 5.3e-68 262.3 353 49.6
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 5.8e-67 258.8 282 62.4
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 1.3e-63 247.7 140 86.4
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 2.3e-63 246.9 285 54.4
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 7.4e-62 241.9 196 63.3
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 4.8e-61 239.2 190 64.7
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 1.1e-52 211.5 193 53.4
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 5.3e-52 209.1 183 56.8
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 1.7e-50 204.1 172 55.8
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 2.7e-48 196.8 181 54.7
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 5.7e-46 189.1 192 49.0
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 5.3e-28 129.4 82 75.6
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 3.7e-21 106.7 72 75.0
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 1.4e-20 104.8 117 45.3
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 3.1e-20 103.6 132 41.7
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 5.0e-18 96.3 187 34.2
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 9.5e-17 92.0 57 82.5
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 8.0e-16 89.0 189 30.2
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 2.0e-14 84.3 47 91.5
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 2.3e-10 70.9 44 68.2
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.8e-07 61.2 74 48.6
Solyc05g013480.4 Solanum lycopersicum HOM05D006540 ORTHO05D008202 5.8e-06 56.2 95 49.5


User provided reference genes

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