Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 9.8e-175 616.7 311 100.0
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 1.3e-121 440.3 311 74.6
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 2.5e-117 426.0 291 74.6
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 8.7e-115 417.5 311 72.0
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 1.4e-107 393.7 302 69.5
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 2.6e-95 352.8 264 70.1
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 3.5e-79 299.3 291 56.0
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 2.7e-76 289.7 312 51.9
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 6.1e-76 288.5 313 49.8
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 6.8e-75 285.0 292 51.7
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 9.8e-74 281.2 315 50.2
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 2.2e-73 280.0 296 51.0
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 8.3e-73 278.1 290 53.1
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 5.4e-72 275.4 313 50.5
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 7.0e-72 275.0 299 53.5
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 3.5e-71 272.7 314 50.3
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 5.0e-70 268.9 313 50.5
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 1.5e-69 267.3 335 44.2
TAR371G0523 Trochodendron aralioides HOM05D006585 ORTHO05D007798 2.5e-69 266.5 314 48.7
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 9.5e-69 264.6 314 47.1
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 6.1e-68 261.9 335 43.3
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 8.0e-68 261.5 355 42.3
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 8.0e-68 261.5 344 44.8
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 8.0e-68 261.5 313 47.6
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 1.0e-67 261.2 284 51.4
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 4.0e-67 259.2 291 50.5
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 1.8e-64 250.4 317 44.8
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 9.2e-64 248.1 348 42.5
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 9.2e-64 248.1 300 48.7
GSVIVG01004087001 Vitis vinifera HOM05D006585 ORTHO05D007798 1.6e-63 247.3 315 46.3
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 1.0e-62 244.6 316 47.5
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 7.3e-61 238.4 338 43.8
Ciclev10033875m.g Citrus clementina HOM05D006585 ORTHO05D007798 1.6e-60 237.3 315 45.4
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 1.6e-60 237.3 342 45.3
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 4.7e-60 235.7 327 42.2
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 4.7e-60 235.7 327 42.2
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 8.0e-60 235.0 290 46.9
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 3.1e-59 233.0 312 45.2
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 2.6e-58 229.9 307 45.6
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 2.2e-57 226.9 296 45.9
MD13G1097900 Malus domestica HOM05D006585 ORTHO05D007798 9.2e-56 221.5 325 40.6
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 3.5e-55 219.5 303 46.2
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 2.3e-54 216.9 347 41.8
Dinv20613 Davidia involucrata HOM05D006585 ORTHO05D007798 1.2e-52 211.1 315 40.6
Aqoxy5G03808 Aquilegia oxysepala HOM05D006585 ORTHO05D007798 2.8e-52 209.9 313 41.9
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 3.6e-52 209.5 364 36.5
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 4.7e-52 209.1 340 37.1
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 5.2e-51 205.7 321 41.7
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 6.8e-51 205.3 360 36.9
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 7.5e-50 201.8 298 39.9
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 4.9e-49 199.1 367 37.1
Nn3g16750 Nelumbo nucifera HOM05D006585 ORTHO05D007798 1.6e-47 194.1 297 42.4
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 2.7e-47 193.4 319 38.9
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 1.7e-46 190.7 349 35.8
MBI10_g00733_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 3.9e-46 189.5 299 40.1
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 1.9e-45 187.2 294 40.1
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 3.3e-45 186.4 278 40.3
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 7.3e-45 185.3 344 36.6
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 1.6e-44 184.1 360 34.2
TAR629G0056 Trochodendron aralioides HOM05D006585 ORTHO05D007798 2.1e-44 183.7 264 42.0
MBI16_g23844_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 3.1e-43 179.9 321 37.4
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 1.5e-42 177.6 293 38.6
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 2.6e-42 176.8 364 35.4
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 2.6e-42 176.8 345 34.8
Lalb_Chr16g0392221 Lupinus albus HOM05D006585 ORTHO05D007798 2.6e-42 176.8 211 51.2
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 3.4e-42 176.4 306 37.3
Cc11_g15560 Coffea canephora HOM05D006585 ORTHO05D007798 3.7e-41 172.9 334 36.2
HanXRQChr17g0539731 Helianthus annuus HOM05D006585 ORTHO05D007798 1.4e-40 171.0 313 37.4
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 2.1e-39 167.2 322 36.0
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 2.7e-39 166.8 396 31.6
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.3e-38 164.5 170 49.4
Haze_12236 Corylus avellana HOM05D006585 ORTHO05D007798 2.3e-38 163.7 210 44.8
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 6.6e-38 162.2 170 48.2
Aa31LG1G4120 Aethionema arabicum HOM05D006585 ORTHO05D007798 7.3e-37 158.7 297 36.0
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 1.2e-36 157.9 371 31.3
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 6.2e-36 155.6 411 30.2
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 1.1e-35 154.8 319 34.8
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 1.5e-34 151.0 378 32.5
COL.COLO4_30156 Corchorus olitorius HOM05D006585 ORTHO05D007798 5.8e-34 149.1 284 35.2
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 7.6e-34 148.7 291 34.7
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 2.2e-33 147.1 275 35.6
SGA_v2.0_scaffold63G21726 Striga asiatica HOM05D006585 ORTHO05D007798 2.4e-32 143.7 318 31.8
Actinidia08143 Actinidia chinensis HOM05D006585 ORTHO05D007798 1.6e-31 141.0 352 34.1
AUR62024297 Chenopodium quinoa HOM05D006585 ORTHO05D007798 3.5e-31 139.8 301 38.2
TPR.G34666 Trifolium pratense HOM05D006585 ORTHO05D007798 3.5e-31 139.8 170 48.2
ATR1154G038 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.0e-30 138.3 302 33.4
Atru.chr11.2134 Acer truncatum HOM05D006585 ORTHO05D007798 3.0e-30 136.7 291 35.1
EL10Ac6g13783 Beta vulgaris HOM05D006585 ORTHO05D007798 6.6e-30 135.6 301 35.5
PGR119G1584 Punica granatum HOM05D006585 ORTHO05D007798 6.6e-30 135.6 323 33.7
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 1.1e-29 134.8 314 31.2
Atru.chr11.2118 Acer truncatum HOM05D006585 ORTHO05D007798 4.3e-29 132.9 291 34.4
Ah.03g133160 Amaranthus hybridus HOM05D006585 ORTHO05D007798 6.2e-28 129.0 298 34.6
Rhsim12G0041300 Rhododendron simsii HOM05D006585 ORTHO05D007798 1.8e-27 127.5 433 28.9
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 3.4e-26 123.2 133 51.9
SHI17754 Sapria himalayana HOM05D006585 ORTHO05D007798 7.6e-26 122.1 218 32.1
Thecc.03G022200 Theobroma cacao HOM05D006585 ORTHO05D007798 1.1e-24 118.2 243 34.6
ATR1154G026 Amborella trichopoda HOM05D006585 ORTHO05D007798 9.3e-24 115.2 257 34.2
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 1.0e-22 111.7 256 32.4
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 1.3e-22 111.3 143 46.2
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 1.1e-21 108.2 91 53.8
Zm00001eb382430 Zea mays HOM05D006585 ORTHO05D007798 4.3e-21 106.3 328 28.7
HPP92_008331 Vanilla planifolia HOM05D006585 ORTHO05D007798 3.1e-19 100.1 148 37.2
PSO832G2940 Papaver somniferum HOM05D006585 ORTHO05D007798 5.8e-18 95.9 117 41.0
PSO832G3049 Papaver somniferum HOM05D000629 ORTHO05D007798 1.1e-16 91.7 269 29.7
PSO063G7660 Papaver somniferum HOM05D000629 ORTHO05D007798 2.4e-16 90.5 296 29.1
Oeu056719.1 Olea europaea HOM05D006585 ORTHO05D007798 1.3e-14 84.7 175 37.1
HPP92_008334 Vanilla planifolia HOM05D034240 ORTHO05D007798 8.1e-12 75.5 200 30.0
Cc04_g11830 Coffea canephora HOM05D006585 ORTHO05D007798 1.1e-11 75.1 179 33.5
PSO063G0496 Papaver somniferum HOM05D006585 ORTHO05D007798 1.1e-11 75.1 326 25.8
SalBow8G2270 Salvia bowleyana HOM05D006585 ORTHO05D007798 1.1e-11 75.1 202 32.2
EL10Ac5g10683 Beta vulgaris HOM05D006585 ORTHO05D007798 2.6e-10 70.5 117 39.3
SEGI_25539 Sequoiadendron giganteum HOM05D006585 ORTHO05D007798 5.8e-10 69.3 258 25.6
DCAR_005656 Daucus carota HOM05D006585 ORTHO05D007798 8.4e-09 65.5 79 48.1
SGA_v2.0_scaffold779G53588 Striga asiatica HOM05D006585 ORTHO05D007798 1.6e-07 61.2 91 38.5
SGA_v2.0_scaffold34G13586 Striga asiatica HOM05D006585 ORTHO05D007798 2.7e-07 60.5 91 38.5
CDE06G0796 Ceratophyllum demersum HOM05D006585 ORTHO05D007798 8.7e-06 55.5 308 22.4


User provided reference genes

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