Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 5.8e-220 767.3 399 100.0
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.2e-140 503.8 392 69.6
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.8e-136 490.0 370 73.2
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.3e-136 489.6 392 69.1
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 4.0e-136 488.8 392 69.4
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.5e-95 354.0 401 51.1
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.5e-76 289.7 407 45.7
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.8e-72 277.3 403 44.2
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 1.2e-68 264.6 380 44.2
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 3.7e-65 253.1 400 41.8
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 4.8e-65 252.7 392 42.3
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 6.2e-65 252.3 416 42.1
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 8.1e-65 251.9 419 41.8
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 1.4e-64 251.1 424 41.7
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 4.0e-64 249.6 417 41.5
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 5.3e-64 249.2 389 43.7
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 2.6e-63 246.9 390 42.8
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 3.4e-63 246.5 383 43.6
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.4e-63 246.5 424 40.8
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 7.6e-63 245.4 399 40.4
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.7e-62 244.2 393 41.7
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.8e-62 243.0 401 40.4
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 4.9e-62 242.7 412 40.8
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 6.5e-62 242.3 393 39.9
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 8.4e-62 241.9 398 43.0
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 8.4e-62 241.9 411 41.6
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-61 241.5 398 40.5
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.9e-61 240.7 401 40.4
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 4.2e-61 239.6 396 41.9
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 5.5e-61 239.2 408 40.9
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.5e-61 239.2 398 40.5
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 5.5e-61 239.2 398 41.5
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 2.1e-60 237.3 390 41.0
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 2.1e-60 237.3 396 40.9
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.7e-60 236.9 401 41.4
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 3.5e-60 236.5 426 39.7
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 4.6e-60 236.1 392 40.8
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 7.9e-60 235.3 395 38.2
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 1.0e-59 235.0 393 41.0
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.3e-59 234.6 401 39.9
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.3e-59 234.6 400 39.8
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.8e-59 234.2 390 43.3
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 3.9e-59 233.0 384 40.1
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.7e-59 231.9 391 38.6
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.1e-58 231.5 393 39.7
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 1.5e-58 231.1 386 40.9
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 1.9e-58 230.7 390 38.5
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.9e-58 230.7 399 40.1
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.5e-58 230.3 411 40.4
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.5e-58 230.3 422 40.3
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.3e-58 229.9 412 39.6
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 4.3e-58 229.6 397 40.3
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.7e-58 229.2 411 40.4
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 9.6e-58 228.4 396 38.1
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 3.7e-57 226.5 385 40.5
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 6.3e-57 225.7 384 39.3
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 6.3e-57 225.7 420 39.0
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.1e-56 224.9 414 37.9
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.1e-56 223.4 421 38.5
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 4.1e-56 223.0 411 39.2
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 6.9e-56 222.2 414 39.9
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 9.0e-56 221.9 403 37.5
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.5e-55 221.1 423 40.4
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.5e-55 221.1 346 40.5
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 2.0e-55 220.7 396 39.9
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 3.4e-55 219.9 403 37.5
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 3.4e-55 219.9 416 38.5
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 3.4e-55 219.9 347 41.8
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 4.5e-55 219.5 403 37.2
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 4.5e-55 219.5 403 37.2
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 7.6e-55 218.8 382 39.0
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 7.6e-55 218.8 361 39.9
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 1.0e-54 218.4 395 38.2
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.3e-54 218.0 380 40.0
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.7e-54 217.6 380 40.0
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.7e-54 217.6 395 38.7
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 2.2e-54 217.2 384 38.3
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 2.2e-54 217.2 380 40.0
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 2.2e-54 217.2 386 41.5
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.9e-54 216.9 413 39.2
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 2.9e-54 216.9 418 38.5
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 3.8e-54 216.5 407 36.1
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 3.8e-54 216.5 389 38.6
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 5.0e-54 216.1 400 38.5
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 6.5e-54 215.7 422 36.7
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 8.4e-54 215.3 379 38.3
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.1e-53 214.9 396 38.1
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.1e-53 214.9 396 37.9
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 1.4e-53 214.5 421 38.5
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.4e-53 214.5 413 38.0
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 1.9e-53 214.2 382 39.5
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 4.2e-53 213.0 355 41.4
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 4.2e-53 213.0 366 38.5
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 5.5e-53 212.6 379 38.3
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.2e-52 211.5 403 39.7
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.6e-52 211.1 392 38.8
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 4.6e-52 209.5 420 36.2
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 7.9e-52 208.8 399 35.8
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 7.9e-52 208.8 407 36.6
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.0e-51 208.4 400 38.0
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 3.9e-51 206.5 387 40.8
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 6.7e-51 205.7 392 37.5
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.1e-50 204.9 340 42.1
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.9e-50 204.1 409 37.2
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 2.5e-50 203.8 411 35.5
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 1.6e-49 201.1 336 39.0
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 2.2e-49 200.7 344 42.2
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 3.7e-49 199.9 401 38.2
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 6.3e-49 199.1 398 35.9
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 8.2e-49 198.7 414 36.2
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.8e-48 197.6 413 35.8
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.8e-48 197.6 397 37.5
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 3.1e-48 196.8 405 35.8
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 4.1e-48 196.4 397 38.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 5.3e-48 196.1 408 35.8
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.5e-47 194.5 403 36.2
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.5e-47 194.5 403 37.0
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.0e-47 194.1 408 36.5
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.2e-46 190.7 375 37.3
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 7.2e-45 185.7 338 37.6
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 4.6e-44 183.0 397 36.8
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 3.0e-43 180.3 391 33.8
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.9e-43 179.9 383 33.9
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 5.1e-43 179.5 385 34.5
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.3e-42 176.4 394 35.5
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.7e-41 173.3 326 38.0
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 3.7e-41 173.3 380 33.2
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 4.8e-41 172.9 392 34.4
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 2.4e-40 170.6 379 33.8
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 1.2e-39 168.3 392 33.2
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 2.0e-39 167.5 316 37.3
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.0e-39 167.5 388 35.8
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 7.7e-39 165.6 479 32.6
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 2.5e-37 160.6 389 33.7
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.1e-36 157.5 365 32.6
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.0e-35 155.2 318 36.5
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 2.2e-33 147.5 389 34.7
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.8e-33 147.1 226 43.4
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 7.0e-32 142.5 407 32.9
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 2.0e-31 141.0 364 34.1
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 3.5e-31 140.2 359 34.8
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 2.2e-30 137.5 426 32.4
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 2.9e-30 137.1 409 28.9
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 5.5e-29 132.9 250 38.4
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.6e-28 130.2 387 28.4
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 8.0e-28 129.0 225 39.1
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.1e-26 125.2 218 41.7
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.1e-24 118.6 314 33.8
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.0e-23 114.4 184 39.1
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 2.7e-20 104.0 397 28.5
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 2.7e-20 104.0 182 43.4
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 8.0e-20 102.4 226 35.0
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 1.4e-19 101.7 192 37.5
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.8e-19 101.3 371 29.6
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.0e-19 100.5 218 32.6
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 1.5e-18 98.2 130 43.8
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 8.3e-17 92.4 293 28.7
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 3.5e-15 87.0 200 33.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.0e-14 85.5 139 42.4
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.7e-14 84.7 103 47.6
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 8.0e-12 75.9 52 63.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.4e-11 75.1 220 31.4
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.2e-11 73.2 121 41.3
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.2e-10 72.0 102 42.2
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 2.8e-09 67.4 122 41.8
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 2.8e-09 67.4 49 63.3
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.7e-09 67.0 296 26.7
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 4.9e-09 66.6 119 35.3
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 2.7e-07 60.8 46 65.2
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.3e-06 58.5 106 38.7
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 2.9e-06 57.4 392 21.7
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.9e-06 57.4 92 43.5
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 3.8e-06 57.0 150 32.0
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 6.6e-06 56.2 66 48.5


User provided reference genes

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