Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G249500 Theobroma cacao HOM05D002881 ORTHO05D010329 1.2e-114 416.4 192 100.0
Thecc.10G137400 Theobroma cacao HOM05D002881 ORTHO05D002983 4.1e-107 391.3 214 86.9
Thecc.06G098800 Theobroma cacao HOM05D002881 ORTHO05D010329 2.3e-105 385.6 214 85.0
Thecc.02G279500 Theobroma cacao HOM05D002881 ORTHO05D010329 4.8e-87 324.7 214 72.4
Thecc.05G210100 Theobroma cacao HOM05D002881 ORTHO05D002983 1.6e-79 299.7 197 75.6
Thecc.10G091900 Theobroma cacao HOM05D002881 ORTHO05D010329 2.1e-74 282.7 211 61.6
Thecc.02G286200 Theobroma cacao HOM05D002881 ORTHO05D002983 1.4e-62 243.4 194 58.2
Thecc.03G121800 Theobroma cacao HOM05D002881 ORTHO05D002983 2.6e-61 239.2 189 63.5
Thecc.04G051200 Theobroma cacao HOM05D002881 ORTHO05D002983 5.0e-52 208.4 189 51.9
Duzib235G1144 Durio zibethinus HOM05D002881 ORTHO05D002983 3.5e-37 159.1 189 42.3
Gorai.002G202700 Gossypium raimondii HOM05D002881 ORTHO05D002983 1.3e-36 157.1 213 36.6
Gohir.D13G093150 Gossypium hirsutum HOM05D002881 ORTHO05D002983 2.2e-36 156.4 209 37.8
Thecc.05G072600 Theobroma cacao HOM05D002881 ORTHO05D002983 2.7e-29 132.9 189 38.1
TWI56G0801 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 7.7e-29 131.3 221 34.8
Thecc.03G050000 Theobroma cacao HOM05D002881 ORTHO05D010329 2.2e-28 129.8 56 98.2
Thecc.08G197700 Theobroma cacao HOM05D002881 ORTHO05D010329 4.2e-27 125.6 179 41.3
TWI23G0459 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 1.6e-26 123.6 221 33.0
Sed0006040 Sechium edule HOM05D002881 ORTHO05D010329 2.7e-26 122.9 220 31.4
Duzib151G1070 Durio zibethinus HOM05D002881 ORTHO05D002983 2.3e-25 119.8 167 38.9
COL.COLO4_04691 Corchorus olitorius HOM05D002881 ORTHO05D002983 7.5e-24 114.8 153 39.2
Thecc.07G191800 Theobroma cacao HOM05D002881 ORTHO05D002983 1.1e-22 110.9 72 63.9
COL.COLO4_20929 Corchorus olitorius HOM05D002881 ORTHO05D002983 7.0e-22 108.2 150 39.3
Gohir.D01G148150 Gossypium hirsutum HOM05D002881 ORTHO05D002983 7.0e-22 108.2 167 34.7
TWI56G1458 Tripterygium wilfordii HOM05D036929 ORTHO05D010329 9.1e-22 107.8 208 32.2
Potri.T002768 Populus trichocarpa HOM05D002881 ORTHO05D002983 1.2e-21 107.5 206 31.1
TWI53G0826 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 3.8e-20 102.4 208 30.3
Gorai.010G160500 Gossypium raimondii HOM05D002881 ORTHO05D002983 8.6e-20 101.3 168 32.7
Gohir.A04G057152 Gossypium hirsutum HOM05D002881 ORTHO05D002983 8.9e-17 91.3 179 28.5
CAN.G82.5 Capsicum annuum HOM05D025468 ORTHO05D019542 5.7e-16 88.6 68 52.9
COL.COLO4_37634 Corchorus olitorius HOM05D035067 ORTHO05D010329 2.2e-15 86.7 87 44.8
TPR.G23480 Trifolium pratense HOM05D002881 ORTHO05D002983 2.2e-15 86.7 202 28.7
Medtr5g084310 Medicago truncatula HOM05D002881 ORTHO05D002983 3.7e-15 85.9 197 28.9
Medtr5g085650 Medicago truncatula HOM05D002881 ORTHO05D002983 3.7e-15 85.9 197 28.9
Medtr1g018990 Medicago truncatula HOM05D002881 ORTHO05D002983 6.3e-15 85.1 197 28.9
Medtr3g082580 Medicago truncatula HOM05D002881 ORTHO05D002983 6.3e-15 85.1 197 28.9
Medtr7g079940 Medicago truncatula HOM05D002881 ORTHO05D002983 6.3e-15 85.1 197 28.9
Medtr2g049380 Medicago truncatula HOM05D002881 ORTHO05D002983 8.3e-15 84.7 199 26.1
Medtr5g028560 Medicago truncatula HOM05D002881 ORTHO05D002983 8.3e-15 84.7 197 28.9
Medtr5g040810 Medicago truncatula HOM05D002881 ORTHO05D002983 8.3e-15 84.7 197 28.9
Medtr6g027000 Medicago truncatula HOM05D002881 ORTHO05D002983 8.3e-15 84.7 197 28.9
Medtr7g028120 Medicago truncatula HOM05D002881 ORTHO05D002983 8.3e-15 84.7 197 28.9
Medtr5g015640 Medicago truncatula HOM05D002881 ORTHO05D002983 1.4e-14 84.0 197 28.9
Medtr0029s0060 Medicago truncatula HOM05D002881 ORTHO05D002983 1.8e-14 83.6 197 28.4
Medtr3g100770 Medicago truncatula HOM05D002881 ORTHO05D002983 1.8e-14 83.6 197 28.4
Medtr5g036210 Medicago truncatula HOM05D002881 ORTHO05D002983 1.8e-14 83.6 197 28.4
MELO3C027262.2 Cucumis melo HOM05D005793 ORTHO05D010329 2.4e-14 83.2 72 47.2
MELO3C033709.2 Cucumis melo HOM05D005793 ORTHO05D010329 2.4e-14 83.2 72 47.2
Gorai.001G080800 Gossypium raimondii HOM05D002881 ORTHO05D002983 2.4e-14 83.2 141 31.2
Medtr0866s0010 Medicago truncatula HOM05D002881 ORTHO05D002983 2.4e-14 83.2 199 25.6
CAN.G1.9 Capsicum annuum HOM05D025468 ORTHO05D019542 3.1e-14 82.8 68 50.0
MELO3C013661.2 Cucumis melo HOM05D005793 ORTHO05D010329 3.1e-14 82.8 67 49.3
MELO3C027170.2 Cucumis melo HOM05D005793 ORTHO05D010329 3.1e-14 82.8 72 45.8
TPR.G36338 Trifolium pratense HOM05D002881 ORTHO05D002983 5.4e-14 82.0 205 27.8
Medtr5g074255 Medicago truncatula HOM05D002881 ORTHO05D002983 7.0e-14 81.6 197 28.4
Medtr4g009470 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-13 80.9 199 27.6
Medtr6g471550 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-13 80.9 199 27.1
Thecc.08G178300 Theobroma cacao HOM05D002881 ORTHO05D002983 1.6e-13 80.5 45 80.0
COL.COLO4_08519 Corchorus olitorius HOM05D035067 ORTHO05D010329 2.0e-13 80.1 87 43.7
Medtr3g047220 Medicago truncatula HOM05D002881 ORTHO05D002983 2.7e-13 79.7 199 27.6
Medtr3g023410 Medicago truncatula HOM05D002881 ORTHO05D002983 3.5e-13 79.3 199 26.6
Medtr7g077015 Medicago truncatula HOM05D002881 ORTHO05D002983 5.9e-13 78.6 199 26.6
Medtr1g036610 Medicago truncatula HOM05D002881 ORTHO05D002983 7.8e-13 78.2 199 26.6
Gohir.D12G068401 Gossypium hirsutum HOM05D002881 ORTHO05D002983 1.0e-12 77.8 147 32.7
Medtr3g051650 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-12 77.4 197 27.4
Medtr3g013580 Medicago truncatula HOM05D002881 ORTHO05D002983 3.8e-12 75.9 197 26.9
Medtr6g061790 Medicago truncatula HOM05D002881 ORTHO05D002983 3.8e-12 75.9 199 26.6
Medtr7g006680 Medicago truncatula HOM05D002881 ORTHO05D002983 3.8e-12 75.9 197 26.9
Medtr7g046110 Medicago truncatula HOM05D002881 ORTHO05D002983 3.8e-12 75.9 197 26.9
Medtr3g091160 Medicago truncatula HOM05D002881 ORTHO05D002983 5.0e-12 75.5 197 26.9
MELO3C025327.2 Cucumis melo HOM05D002881 ORTHO05D002983 6.6e-12 75.1 172 27.3
MELO3C027563.2 Cucumis melo HOM05D005793 ORTHO05D010329 6.6e-12 75.1 72 43.1
MELO3C031109.2 Cucumis melo HOM05D002881 ORTHO05D002983 6.6e-12 75.1 172 26.2
Medtr5g080530 Medicago truncatula HOM05D002881 ORTHO05D002983 8.6e-12 74.7 197 26.4
MELO3C027473.2 Cucumis melo HOM05D005793 ORTHO05D010329 4.3e-11 72.4 67 43.3
Medtr6g084020 Medicago truncatula HOM05D002881 ORTHO05D002983 9.5e-11 71.2 151 29.8
MELO3C031989.2 Cucumis melo HOM05D005793 ORTHO05D010329 2.8e-10 69.7 57 45.6
TPR.G18606 Trifolium pratense HOM05D002881 ORTHO05D002983 3.6e-10 69.3 171 25.7
MELO3C027464.2 Cucumis melo HOM05D005793 ORTHO05D010329 1.0e-09 67.8 62 45.2
Medtr3g047715 Medicago truncatula HOM05D002881 ORTHO05D002983 1.0e-09 67.8 160 30.0
Medtr3g067340 Medicago truncatula HOM05D002881 ORTHO05D002983 1.4e-09 67.4 181 27.1
Medtr6g065615 Medicago truncatula HOM05D002881 ORTHO05D002983 1.4e-09 67.4 182 25.3
MELO3C034156.2 Cucumis melo HOM05D005793 ORTHO05D010329 2.3e-09 66.6 61 44.3
Medtr0237s0060 Medicago truncatula HOM05D002881 ORTHO05D002983 3.1e-09 66.2 182 26.4
Medtr3g451910 Medicago truncatula HOM05D002881 ORTHO05D002983 4.0e-09 65.9 169 26.6
Medtr3g452070 Medicago truncatula HOM05D002881 ORTHO05D002983 5.2e-09 65.5 160 28.1
Medtr5g015985 Medicago truncatula HOM05D002881 ORTHO05D002983 5.2e-09 65.5 182 25.8
Medtr0038s0010 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 25.8
Medtr0046s0100 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 201 27.4
Medtr0089s0050 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 24.7
Medtr0143s0020 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 25.8
Medtr0336s0030 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 25.8
Medtr0350s0030 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 25.8
Medtr2g038655 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 25.8
Medtr3g026088 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 25.8
Medtr3g049113 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 25.8
Medtr5g470710 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 25.8
Medtr7g071103 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 25.8
Medtr7g081465 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-09 65.1 182 25.8
Sopen05g014510 Solanum pennellii HOM05D002047 ORTHO05D001422 6.8e-09 65.1 150 30.0
Medtr0143s0050 Medicago truncatula HOM05D002881 ORTHO05D002983 8.9e-09 64.7 182 24.7
Medtr3g026875 Medicago truncatula HOM05D002881 ORTHO05D002983 8.9e-09 64.7 182 24.7
Medtr3g457840 Medicago truncatula HOM05D002881 ORTHO05D002983 8.9e-09 64.7 182 25.8
Medtr4g016445 Medicago truncatula HOM05D002881 ORTHO05D002983 8.9e-09 64.7 182 26.4
Medtr4g040010 Medicago truncatula HOM05D002881 ORTHO05D002983 8.9e-09 64.7 182 24.7
Medtr6g072130 Medicago truncatula HOM05D002881 ORTHO05D002983 8.9e-09 64.7 203 24.1
Medtr6g072867 Medicago truncatula HOM05D002881 ORTHO05D002983 8.9e-09 64.7 182 24.7
Medtr6g074695 Medicago truncatula HOM05D002881 ORTHO05D002983 8.9e-09 64.7 182 25.8
TPR.G35157 Trifolium pratense HOM05D002881 ORTHO05D000589 8.9e-09 64.7 169 26.0
Medtr0029s0020 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-08 64.3 182 24.7
Medtr0089s0130 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-08 64.3 204 22.5
Medtr2g435990 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-08 64.3 182 25.8
Medtr3g451310 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-08 64.3 182 24.2
Medtr4g044730 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-08 64.3 182 25.8
Medtr5g059485 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-08 64.3 182 25.8
Medtr5g071147 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-08 64.3 182 25.8
Sopen05g012170 Solanum pennellii HOM05D002047 ORTHO05D001422 1.2e-08 64.3 148 29.1
Medtr4g465410 Medicago truncatula HOM05D002881 ORTHO05D002983 1.5e-08 63.9 182 24.2
Medtr5g095335 Medicago truncatula HOM05D002881 ORTHO05D002983 1.5e-08 63.9 182 25.8
Medtr6g014055 Medicago truncatula HOM05D002881 ORTHO05D002983 1.5e-08 63.9 182 25.8
Medtr6g046375 Medicago truncatula HOM05D002881 ORTHO05D002983 1.5e-08 63.9 182 24.2
Medtr8g052425 Medicago truncatula HOM05D002881 ORTHO05D002983 1.5e-08 63.9 182 25.8
PGR031G1522 Punica granatum HOM05D013472 ORTHO05D015108 1.5e-08 63.9 114 32.5
Medtr5g423980 Medicago truncatula HOM05D002881 ORTHO05D002983 2.0e-08 63.5 182 24.2
Medtr4g043765 Medicago truncatula HOM05D002881 ORTHO05D002983 2.6e-08 63.2 182 24.2
Medtr5g078975 Medicago truncatula HOM05D002881 ORTHO05D002983 2.6e-08 63.2 182 23.6
Medtr2g090930 Medicago truncatula HOM05D002881 ORTHO05D002983 3.4e-08 62.8 182 24.2
Medtr7g046515 Medicago truncatula HOM05D002881 ORTHO05D002983 3.4e-08 62.8 182 24.2
Sopen02g007640 Solanum pennellii HOM05D002047 ORTHO05D001422 3.4e-08 62.8 152 28.9
Sopen11g019410 Solanum pennellii HOM05D002047 ORTHO05D001422 3.4e-08 62.8 152 28.9
Medtr7g071873 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-08 62.4 162 25.3
TWI79G0344 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 4.4e-08 62.4 122 29.5
MELO3C028870.2 Cucumis melo HOM05D005793 ORTHO05D010329 5.8e-08 62.0 64 45.3
Ca_07212_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 7.5e-08 61.6 165 25.5
Medtr0089s0070 Medicago truncatula HOM05D002881 ORTHO05D002983 7.5e-08 61.6 162 25.3
Medtr4g044687 Medicago truncatula HOM05D002881 ORTHO05D002983 7.5e-08 61.6 162 25.3
Ca_12497_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 9.8e-08 61.2 165 26.7
MELO3C033144.2 Cucumis melo HOM05D005793 ORTHO05D010329 9.8e-08 61.2 61 42.6
Medtr5g060015 Medicago truncatula HOM05D002881 ORTHO05D002983 9.8e-08 61.2 182 23.6
MELO3C027451.2 Cucumis melo HOM05D005793 ORTHO05D010329 1.3e-07 60.8 59 47.5
Medtr3g020590 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-07 60.8 179 25.7
Medtr8g054530 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-07 60.8 171 26.3
Medtr2g065338 Medicago truncatula HOM05D002881 ORTHO05D002983 1.7e-07 60.5 162 25.9
Medtr4g039657 Medicago truncatula HOM05D002881 ORTHO05D002983 1.7e-07 60.5 182 25.3
Lalb_Chr10g0094031 Lupinus albus HOM05D064032 ORTHO05D002983 2.2e-07 60.1 201 25.4
Sopen04g022160 Solanum pennellii HOM05D002047 ORTHO05D001422 2.9e-07 59.7 150 28.7
TPR.G35764 Trifolium pratense HOM05D002881 ORTHO05D002983 2.9e-07 59.7 194 24.7
MELO3C000665.2 Cucumis melo HOM05D002881 ORTHO05D002983 4.9e-07 58.9 115 28.7
Medtr0014s0420 Medicago truncatula HOM05D002881 ORTHO05D002983 4.9e-07 58.9 160 27.5
Medtr7g035370 Medicago truncatula HOM05D002881 ORTHO05D002983 4.9e-07 58.9 139 28.8
VMungo0720G0531 Vigna mungo HOM05D002881 ORTHO05D002983 6.4e-07 58.5 139 24.5
Ca_19273_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 8.3e-07 58.2 165 26.7
Ca_19521_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 1.1e-06 57.8 129 26.4
MELO3C027523.2 Cucumis melo HOM05D005793 ORTHO05D010329 1.1e-06 57.8 56 42.9
TPR.G18491 Trifolium pratense HOM05D002881 ORTHO05D002983 1.1e-06 57.8 112 27.7
MELO3C029856.2 Cucumis melo HOM05D005793 ORTHO05D010329 1.4e-06 57.4 45 46.7
MELO3C032534.2 Cucumis melo HOM05D005793 ORTHO05D010329 1.4e-06 57.4 45 48.9
Sopen08g007700 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-06 57.4 149 26.8
Ca_04842_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 1.9e-06 57.0 203 24.1
CsaV3_5G027550 Cucumis sativus L. HOM05D005793 ORTHO05D010329 2.4e-06 56.6 49 40.8
PGSC0003DMG400016492 Solanum tuberosum HOM05D002047 ORTHO05D001422 3.2e-06 56.2 141 25.5
Sopen00g005910 Solanum pennellii HOM05D002047 ORTHO05D001422 4.1e-06 55.8 149 25.5
MELO3C004088.2 Cucumis melo HOM05D005793 ORTHO05D010329 5.4e-06 55.5 45 46.7
Sopen05g014240 Solanum pennellii HOM05D000014 ORTHO05D000016 9.2e-06 54.7 146 24.7
Sopen11g014810 Solanum pennellii HOM05D008695 ORTHO05D001422 9.2e-06 54.7 64 35.9


User provided reference genes

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