Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 2.5e-184 648.7 334 100.0
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 5.4e-78 295.4 326 54.0
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 8.6e-68 261.5 317 47.0
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 6.2e-66 255.4 320 46.6
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 9.8e-64 248.1 330 45.2
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.4e-62 244.2 330 46.7
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.5e-61 239.6 330 46.4
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.9e-59 233.8 329 44.7
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 2.8e-58 229.9 320 43.4
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 3.8e-55 219.5 326 42.9
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 8.4e-55 218.4 321 42.1
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 4.1e-54 216.1 315 44.1
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.0e-52 211.5 314 41.1
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 1.7e-52 210.7 312 43.3
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 2.3e-52 210.3 326 42.0
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 3.9e-52 209.5 305 41.0
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 6.9e-49 198.7 337 36.8
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 2.6e-48 196.8 321 41.7
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.9e-47 193.4 320 38.1
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 6.4e-47 192.2 311 41.5
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 8.4e-47 191.8 311 41.5
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 8.4e-47 191.8 318 39.3
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 1.9e-46 190.7 318 39.9
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 2.4e-46 190.3 313 37.7
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 3.2e-46 189.9 312 41.0
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 3.2e-46 189.9 312 40.4
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 7.1e-46 188.7 314 39.2
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 3.5e-45 186.4 328 38.1
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 7.8e-45 185.3 312 39.7
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 1.3e-44 184.5 324 39.2
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 3.0e-44 183.3 322 37.3
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 3.0e-44 183.3 323 37.2
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.1e-44 182.6 325 37.8
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 5.1e-44 182.6 309 38.5
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 5.1e-44 182.6 329 39.2
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 8.7e-44 181.8 324 38.0
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 1.1e-43 181.4 323 37.8
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 1.5e-43 181.0 316 39.9
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 2.5e-43 180.3 344 34.6
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.3e-43 179.9 327 39.1
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 7.3e-43 178.7 335 34.9
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 7.3e-43 178.7 309 38.2
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 9.6e-43 178.3 339 36.6
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 1.3e-42 177.9 318 36.5
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 2.1e-42 177.2 330 35.2
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 4.8e-42 176.0 359 32.9
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 4.8e-42 176.0 317 38.2
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.8e-42 176.0 333 36.9
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 8.1e-42 175.3 326 37.1
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 1.1e-41 174.9 320 37.8
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.1e-41 174.9 319 38.2
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 1.1e-41 174.9 315 36.8
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.4e-41 174.5 329 36.5
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 1.4e-41 174.5 308 38.0
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.8e-41 174.1 311 37.6
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 3.1e-41 173.3 344 33.7
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 3.1e-41 173.3 311 38.3
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.0e-41 172.9 322 39.1
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 6.9e-41 172.2 323 36.5
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 9.0e-41 171.8 352 33.2
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 9.0e-41 171.8 338 34.0
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 9.0e-41 171.8 345 34.2
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 1.2e-40 171.4 317 37.2
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 4.5e-40 169.5 344 33.7
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 7.6e-40 168.7 314 36.3
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 9.9e-40 168.3 116 74.1
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 2.9e-39 166.8 266 40.6
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 3.8e-39 166.4 363 32.5
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 4.9e-39 166.0 307 35.5
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 6.4e-39 165.6 323 35.9
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 8.4e-39 165.2 334 33.5
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 1.4e-38 164.5 328 34.8
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 5.4e-38 162.5 342 33.0
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 9.3e-38 161.8 347 33.7
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 1.2e-37 161.4 320 35.6
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.1e-37 160.6 319 34.2
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 4.6e-37 159.5 334 32.9
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 6.0e-37 159.1 326 35.6
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 7.9e-37 158.7 367 32.2
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 7.9e-37 158.7 288 36.1
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.3e-36 157.9 321 36.8
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 3.0e-36 156.8 331 36.6
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 3.0e-36 156.8 307 37.8
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 3.0e-36 156.8 335 34.6
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 8.7e-36 155.2 306 36.9
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 1.1e-35 154.8 328 36.3
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 1.1e-35 154.8 332 33.1
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.5e-35 154.5 307 38.1
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.5e-35 154.5 316 36.7
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 1.9e-35 154.1 318 36.5
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 2.5e-35 153.7 324 36.4
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.3e-35 153.3 316 36.7
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 4.3e-35 152.9 355 33.5
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 9.6e-35 151.8 355 32.4
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.6e-34 151.0 335 33.4
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 3.6e-34 149.8 342 33.3
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.1e-33 148.3 331 31.7
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.1e-33 148.3 314 35.7
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 1.4e-33 147.9 209 40.7
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 1.8e-33 147.5 360 30.6
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 1.8e-33 147.5 336 33.9
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 2.6e-32 143.7 328 32.9
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 2.6e-32 143.7 292 33.2
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 7.6e-32 142.1 358 29.6
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.3e-31 141.4 341 32.8
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 2.2e-31 140.6 358 29.3
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 6.4e-31 139.0 358 29.6
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 8.4e-31 138.7 361 29.1
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 3.2e-30 136.7 317 31.5
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 7.1e-30 135.6 356 28.9
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 9.3e-30 135.2 342 31.0
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 1.2e-29 134.8 342 31.9
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 1.2e-29 134.8 354 28.8
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 3.5e-29 133.3 352 30.7
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 6.0e-29 132.5 217 36.4
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 1.8e-28 131.0 342 29.5
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.0e-28 130.2 230 37.0
Thecc.02G244800 Theobroma cacao HOM05D003615 ORTHO05D004858 8.7e-28 128.6 150 50.7
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.5e-27 127.9 311 34.4
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 1.9e-27 127.5 236 36.4
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 2.5e-27 127.1 227 40.1
BcaB07g32359 Brassica carinata HOM05D003615 ORTHO05D004858 5.6e-27 125.9 283 32.2
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.1e-26 124.0 345 30.7
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.8e-26 123.6 318 30.8
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 3.7e-26 123.2 346 31.2
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 1.4e-25 121.3 264 31.8
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 1.8e-25 120.9 340 32.4
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 2.4e-25 120.6 205 36.1
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 4.0e-25 119.8 291 33.3
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 6.5e-23 112.5 338 29.9
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.5e-23 112.5 203 35.5
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 2.5e-22 110.5 128 48.4
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 2.5e-22 110.5 341 31.4
Eucgr.B03353 Eucalyptus grandis HOM05D003615 ORTHO05D015110 5.5e-22 109.4 309 30.7
Thecc.02G244700 Theobroma cacao HOM05D003615 ORTHO05D004858 4.6e-21 106.3 314 28.7
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 6.0e-21 105.9 335 27.8
Glyma.05G176900 Glycine max HOM05D003615 ORTHO05D004858 6.0e-21 105.9 218 34.9
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 1.3e-20 104.8 125 45.6
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 1.8e-20 104.4 109 50.5
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 8.7e-20 102.1 244 29.9
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.5e-19 101.3 173 37.0
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 1.9e-19 100.9 194 35.6
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.5e-19 100.5 133 42.1
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 4.3e-19 99.8 215 31.6
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 5.7e-19 99.4 195 34.4
Medtr8g090020 Medicago truncatula HOM05D003615 ORTHO05D004858 7.4e-19 99.0 247 32.4
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 9.6e-19 98.6 196 35.7
Sc18g0001840 Simmondsia chinensis HOM05D003615 ORTHO05D004858 2.4e-17 94.0 231 32.9
Sed0025994 Sechium edule HOM05D000122 ORTHO05D000139 3.1e-17 93.6 277 28.9
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 4.1e-17 93.2 193 32.1
BraA09t39587Z Brassica rapa HOM05D003615 ORTHO05D004858 9.0e-17 92.0 186 32.3
AL1G37590 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 5.9e-16 89.4 315 25.7
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.0e-15 88.6 128 39.8
BcaC05g26283 Brassica carinata HOM05D003615 ORTHO05D004858 5.0e-15 86.3 186 31.2
Nn3g16919 Nelumbo nucifera HOM05D003615 ORTHO05D004858 1.9e-14 84.3 147 40.8
FAN11G1076 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.2e-14 82.4 234 35.5
Duzib187G1117 Durio zibethinus HOM05D003615 ORTHO05D004858 2.1e-13 80.9 136 39.7
FvH4_4g34761 Fragaria vesca HOM05D003615 ORTHO05D015110 2.3e-12 77.4 304 28.0
FAN12G3114 Fragaria x ananassa HOM05D003615 ORTHO05D015110 2.3e-12 77.4 304 28.0
MD16G1090300 Malus domestica HOM05D003615 ORTHO05D015110 8.7e-12 75.5 305 27.2
FAN17G0045 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.3e-10 71.6 138 36.2
Prupe.1G255800 Prunus persica HOM05D003615 ORTHO05D015110 3.7e-10 70.1 118 37.3
FAN17G2106 Fragaria x ananassa HOM05D003615 ORTHO05D015110 6.3e-10 69.3 206 29.6
MD16G1090500 Malus domestica HOM05D003615 ORTHO05D004858 5.3e-09 66.2 140 35.0
BolC5t31001H Brassica oleracea HOM05D003615 ORTHO05D016696 6.9e-09 65.9 76 39.5
PGR142G2932 Punica granatum HOM05D003615 ORTHO05D004858 6.9e-09 65.9 77 42.9
BcaC05g26284 Brassica carinata HOM05D003615 ORTHO05D004858 1.5e-08 64.7 114 36.8
TAR374G0412 Trochodendron aralioides HOM05D002682 ORTHO05D002878 1.5e-08 64.7 178 30.3
FAN17G2861 Fragaria x ananassa HOM05D003615 ORTHO05D015110 2.6e-08 63.9 300 26.0
FAN12G4087 Fragaria x ananassa HOM05D003615 ORTHO05D015110 5.9e-08 62.8 296 26.0
Rhsim10G0024000 Rhododendron simsii HOM05D003615 ORTHO05D004858 5.9e-08 62.8 141 31.2
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 1.0e-07 62.0 185 30.3
FvH4_4g34760 Fragaria vesca HOM05D003615 ORTHO05D015110 1.7e-07 61.2 296 25.7
FAN07G1344 Fragaria x ananassa HOM05D003615 ORTHO05D015110 1.7e-07 61.2 296 25.3
FAN22G2348 Fragaria x ananassa HOM05D003615 ORTHO05D015110 5.0e-07 59.7 112 33.0
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 8.5e-07 58.9 231 25.1
BolC7t42543H Brassica oleracea HOM05D003615 ORTHO05D004858 1.1e-06 58.5 102 33.3
MD16G1090400 Malus domestica HOM05D003615 ORTHO05D015110 1.1e-06 58.5 307 25.7
Eucgr.L03458 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.4e-06 58.2 218 25.7
FAN07G0013 Fragaria x ananassa HOM05D003615 ORTHO05D015110 1.9e-06 57.8 297 26.6
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 3.2e-06 57.0 156 32.1


User provided reference genes

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