Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G244800 Theobroma cacao HOM05D003615 ORTHO05D004858 2.3e-96 355.5 173 100.0
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 2.5e-47 192.6 153 69.3
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 5.7e-31 138.3 150 50.7
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.4e-21 106.3 148 44.6
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 7.0e-21 104.8 150 41.3
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.2e-20 104.0 150 44.7
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.7e-19 100.1 141 44.7
Nn3g16919 Nelumbo nucifera HOM05D003615 ORTHO05D004858 7.2e-18 94.7 153 39.2
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 3.6e-17 92.4 153 37.9
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.8e-16 90.1 146 38.4
Glyma.05G176900 Glycine max HOM05D003615 ORTHO05D004858 3.0e-16 89.4 148 38.5
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 4.0e-16 89.0 163 36.8
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 5.2e-16 88.6 153 38.6
Duzib187G1117 Durio zibethinus HOM05D003615 ORTHO05D004858 6.8e-16 88.2 154 41.6
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 6.8e-16 88.2 149 36.9
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 8.8e-16 87.8 148 35.8
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 1.2e-15 87.4 126 42.9
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 1.5e-15 87.0 155 34.2
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 2.0e-15 86.7 155 37.4
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 2.6e-15 86.3 157 40.1
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 3.4e-15 85.9 143 35.0
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 5.7e-15 85.1 139 40.3
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 5.7e-15 85.1 141 37.6
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 7.5e-15 84.7 155 34.2
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 9.8e-15 84.3 169 32.5
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 9.8e-15 84.3 139 37.4
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 1.3e-14 84.0 152 36.2
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.7e-14 83.6 155 34.2
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 2.2e-14 83.2 178 33.7
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 2.8e-14 82.8 140 40.0
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 3.1e-13 79.3 130 34.6
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 4.1e-13 79.0 134 38.1
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 4.1e-13 79.0 146 37.0
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 5.4e-13 78.6 137 39.4
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.0e-13 78.2 149 36.2
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 1.6e-12 77.0 154 33.8
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 2.0e-12 76.6 137 38.0
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 2.0e-12 76.6 151 34.4
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 2.7e-12 76.3 134 37.3
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.9e-12 75.1 131 35.9
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 5.9e-12 75.1 144 36.1
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.7e-12 74.7 128 36.7
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.0e-11 74.3 148 35.1
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.0e-11 74.3 149 34.2
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.3e-11 73.9 151 33.1
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 1.3e-11 73.9 137 36.5
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 2.2e-11 73.2 151 36.4
Medtr8g090020 Medicago truncatula HOM05D003615 ORTHO05D004858 2.2e-11 73.2 141 38.3
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 2.9e-11 72.8 126 37.3
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 2.9e-11 72.8 146 30.1
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 5.0e-11 72.0 132 34.8
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 6.5e-11 71.6 157 35.7
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 6.5e-11 71.6 136 34.6
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 6.5e-11 71.6 147 35.4
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 8.5e-11 71.2 128 35.9
Thecc.02G244700 Theobroma cacao HOM05D003615 ORTHO05D004858 8.5e-11 71.2 133 33.8
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 1.1e-10 70.9 144 34.0
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 1.1e-10 70.9 181 32.0
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 1.5e-10 70.5 147 32.0
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 1.9e-10 70.1 169 30.8
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 2.5e-10 69.7 143 35.7
FAN17G0045 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.5e-10 69.7 126 36.5
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 3.2e-10 69.3 163 34.4
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 5.5e-10 68.6 131 32.8
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 7.2e-10 68.2 132 32.6
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 7.2e-10 68.2 189 34.4
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 1.2e-09 67.4 153 31.4
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 1.6e-09 67.0 153 30.1
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 1.6e-09 67.0 131 32.8
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 2.1e-09 66.6 121 37.2
BraA09t39587Z Brassica rapa HOM05D003615 ORTHO05D004858 3.6e-09 65.9 137 35.8
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 3.6e-09 65.9 140 34.3
BcaC05g26283 Brassica carinata HOM05D003615 ORTHO05D004858 4.7e-09 65.5 141 35.5
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 4.7e-09 65.5 141 35.5
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 6.1e-09 65.1 156 35.3
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 8.0e-09 64.7 151 30.5
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 8.0e-09 64.7 134 35.1
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.0e-08 64.3 153 35.9
BcaB07g32359 Brassica carinata HOM05D003615 ORTHO05D004858 1.8e-08 63.5 146 32.2
Rhsim10G0024000 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.3e-08 63.2 147 30.6
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.0e-08 62.8 140 37.9
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.0e-08 62.8 140 37.9
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 3.0e-08 62.8 140 28.6
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 4.0e-08 62.4 140 33.6
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 8.8e-08 61.2 137 31.4
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 2.0e-07 60.1 150 29.3
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 9.8e-07 57.8 156 32.1
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 9.8e-07 57.8 154 27.3
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 1.3e-06 57.4 138 31.2
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.2e-06 56.6 154 27.9
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 3.7e-06 55.8 139 30.2
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 4.9e-06 55.5 149 32.9


User provided reference genes

Program Settings