Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 3.3e-150 536.2 602 100.0
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 1.5e-123 447.6 598 91.5
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 3.6e-117 426.4 602 90.0
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 4.6e-112 409.5 602 90.5
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.3e-111 407.9 602 90.4
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.1e-109 400.6 602 89.2
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 1.4e-92 344.7 620 81.1
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 1.5e-91 341.3 608 82.4
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 6.7e-87 325.9 613 82.4
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 2.5e-86 323.9 606 82.0
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 3.1e-84 317.0 618 80.9
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 8.5e-82 308.9 612 80.9
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 4.2e-81 306.6 609 79.0
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 1.2e-80 305.1 627 77.4
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 3.6e-80 303.5 614 76.7
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 3.6e-80 303.5 614 76.5
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.4e-79 301.6 608 80.3
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.4e-79 301.6 608 80.3
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 1.8e-79 301.2 564 64.9
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 1.5e-78 298.1 620 79.8
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 3.3e-78 297.0 619 77.2
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 5.7e-78 296.2 644 66.6
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 2.2e-77 294.3 605 77.9
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 6.3e-77 292.7 616 77.4
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 3.1e-76 290.4 607 78.1
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 2.6e-75 287.3 551 84.0
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 6.5e-74 282.7 609 75.7
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.9e-73 281.2 610 77.5
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 4.7e-72 276.6 604 79.5
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 3.0e-71 273.9 616 76.6
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.0e-71 273.9 621 76.3
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 3.9e-71 273.5 620 77.3
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 5.7e-70 269.6 615 76.3
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 6.3e-69 266.2 615 76.1
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 8.2e-69 265.8 636 71.5
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 1.4e-68 265.0 606 77.1
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 4.1e-68 263.5 613 75.9
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 9.1e-68 262.3 605 77.7
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 9.1e-68 262.3 549 82.0
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.0e-67 261.2 617 67.1
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 5.9e-67 259.6 604 77.6
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 1.0e-66 258.8 602 78.7
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 2.2e-66 257.7 611 74.5
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 2.9e-66 257.3 604 78.0
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 5.0e-66 256.5 604 76.8
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 5.0e-66 256.5 605 77.0
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 1.1e-65 255.4 560 80.9
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 1.5e-65 255.0 541 84.1
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 3.2e-65 253.8 613 76.3
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 7.2e-65 252.7 553 82.5
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 2.1e-64 251.1 627 73.7
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 2.1e-64 251.1 574 79.4
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 4.7e-64 250.0 571 79.5
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 4.7e-64 250.0 613 76.3
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.0e-63 248.8 615 71.4
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.4e-63 248.4 587 76.3
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 5.2e-63 246.5 567 78.0
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 5.2e-63 246.5 535 81.9
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 2.6e-62 244.2 549 80.9
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 3.3e-62 243.8 606 76.6
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 5.7e-62 243.0 608 75.7
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 7.5e-62 242.7 561 80.6
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 2.2e-61 241.1 589 64.7
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 2.2e-61 241.1 558 71.5
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 3.7e-61 240.4 546 81.0
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 6.3e-61 239.6 609 75.4
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 2.4e-60 237.7 622 74.1
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 2.4e-60 237.7 622 74.0
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 9.1e-60 235.7 594 77.3
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 5.0e-58 229.9 605 74.4
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 5.0e-58 229.9 553 80.7
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 5.0e-58 229.9 553 80.8
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 5.0e-58 229.9 553 80.8
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.5e-57 228.4 610 74.9
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 2.5e-57 227.6 553 80.3
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 2.5e-57 227.6 553 80.3
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 1.6e-56 224.9 581 77.5
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 1.0e-55 222.2 226 57.1
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 1.4e-55 221.9 175 65.1
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 1.4e-55 221.9 605 75.2
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 1.8e-55 221.5 557 79.7
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 3.0e-55 220.7 222 56.8
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 1.5e-54 218.4 554 80.0
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 2.0e-54 218.0 223 57.0
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 2.6e-54 217.6 665 69.3
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 8.3e-53 212.6 230 54.3
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 2.4e-52 211.1 231 51.5
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 7.0e-52 209.5 232 52.2
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 4.5e-51 206.8 558 66.1
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 1.0e-50 205.7 542 77.1
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 2.3e-50 204.5 167 61.1
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 4.2e-49 200.3 237 52.7
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 1.2e-48 198.7 471 89.4
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 2.8e-48 197.6 583 60.2
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.1e-48 196.4 252 51.6
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 4.0e-47 193.7 213 54.9
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 5.2e-47 193.4 501 82.0
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 2.6e-46 191.0 489 84.5
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 9.8e-46 189.1 262 46.6
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 4.9e-45 186.8 550 76.7
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 4.5e-43 180.3 217 50.2
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 7.3e-41 172.9 565 74.2
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 3.6e-40 170.6 213 50.2
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.0e-39 167.2 181 55.2
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.0e-39 167.2 181 55.2
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 2.0e-38 164.9 213 46.9
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.7e-37 161.8 543 71.3
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 2.9e-37 161.0 119 65.5
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 4.1e-36 157.1 119 65.5
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 4.6e-35 153.7 549 73.6
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 1.2e-32 145.6 176 49.4
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 2.0e-27 128.3 561 72.4
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 7.8e-27 126.3 243 40.3
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.3e-26 124.8 239 90.4
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 1.1e-23 115.9 175 43.4
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 7.1e-20 103.2 211 37.0
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 4.3e-17 94.0 405 66.7
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.4e-15 89.0 227 85.5
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 2.6e-14 84.7 241 83.4
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 2.6e-14 84.7 241 83.4
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 4.4e-14 84.0 198 35.9
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 1.7e-13 82.0 58 65.5
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 4.6e-11 73.9 539 69.4
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 4.6e-11 73.9 455 78.9
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 2.3e-10 71.6 241 78.4
Cpa.g.sc367.5 Carica papaya HOM05D006250 ORTHO05D007107 9.0e-07 59.7 116 41.4


User provided reference genes

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