Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 3.5e-39 164.5 82 100.0
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 6.0e-31 137.1 81 84.0
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.2e-26 122.9 82 74.4
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 7.6e-26 120.2 82 73.2
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 7.6e-26 120.2 82 73.2
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.6e-18 95.1 77 64.9
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 5.8e-18 94.0 81 61.7
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 7.6e-18 93.6 81 58.0
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 7.6e-18 93.6 83 60.2
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.0e-17 93.2 77 63.6
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 1.7e-17 92.4 74 66.2
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.9e-17 91.7 77 63.6
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.9e-17 91.7 77 63.6
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.4e-16 89.4 88 53.4
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 2.5e-16 88.6 82 58.5
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 3.2e-16 88.2 82 59.8
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 4.2e-16 87.8 82 56.1
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.2e-15 86.3 82 57.3
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 2.1e-15 85.5 81 54.3
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 2.1e-15 85.5 86 52.3
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 2.1e-15 85.5 72 61.1
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.7e-15 85.1 83 55.4
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.7e-15 85.1 83 55.4
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 4.6e-15 84.3 75 56.0
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 7.9e-15 83.6 71 60.6
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 1.0e-14 83.2 81 56.8
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 1.0e-14 83.2 73 60.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.3e-14 82.8 75 57.3
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 1.8e-14 82.4 79 55.7
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 1.8e-14 82.4 75 56.0
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.3e-14 82.0 81 53.1
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.0e-14 81.6 75 60.0
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.9e-14 81.3 82 56.1
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 3.9e-14 81.3 74 60.8
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 3.9e-14 81.3 83 57.8
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 5.1e-14 80.9 75 60.0
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.1e-14 80.9 75 60.0
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 8.7e-14 80.1 80 55.0
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.1e-13 79.7 83 56.6
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.5e-13 79.3 75 58.7
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.9e-13 79.0 83 54.2
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.5e-13 78.6 75 58.7
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 2.5e-13 78.6 82 52.4
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 3.3e-13 78.2 78 57.7
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 4.3e-13 77.8 86 53.5
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 5.7e-13 77.4 78 52.6
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 7.4e-13 77.0 74 52.7
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 9.6e-13 76.6 73 58.9
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 1.6e-12 75.9 78 55.1
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 1.6e-12 75.9 83 51.8
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.6e-12 75.9 82 53.7
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 2.1e-12 75.5 77 50.6
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 2.1e-12 75.5 77 50.6
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 6.2e-12 73.9 77 53.2
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 6.2e-12 73.9 80 51.2
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 6.2e-12 73.9 77 50.6
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 6.2e-12 73.9 71 54.9
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 8.2e-12 73.6 87 50.6
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.4e-11 72.8 77 50.6
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 2.4e-11 72.0 73 53.4
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.4e-11 72.0 78 50.0
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 2.4e-11 72.0 84 52.4
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.1e-11 71.6 80 51.2
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.1e-11 71.6 74 51.4
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 4.0e-11 71.2 84 52.4
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 5.3e-11 70.9 72 51.4
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 5.3e-11 70.9 76 50.0
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 5.3e-11 70.9 81 54.3
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 6.9e-11 70.5 83 51.8
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 6.9e-11 70.5 68 55.9
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 9.0e-11 70.1 76 50.0
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 9.0e-11 70.1 72 50.0
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.2e-10 69.7 81 49.4
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 1.5e-10 69.3 77 49.4
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 3.4e-10 68.2 80 51.2
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.5e-10 67.8 75 53.3
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 7.6e-10 67.0 74 50.0
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 7.6e-10 67.0 73 53.4
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 7.6e-10 67.0 82 48.8
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 7.6e-10 67.0 77 50.6
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.7e-09 65.9 77 50.6
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.7e-09 65.9 81 45.7
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.7e-09 65.9 74 48.6
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 1.7e-09 65.9 76 51.3
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.2e-09 65.5 82 45.1
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.9e-09 65.1 79 49.4
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 2.9e-09 65.1 76 51.3
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 3.8e-09 64.7 85 50.6
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 3.8e-09 64.7 73 47.9
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.8e-09 64.7 78 46.2
Haze_12125 Corylus avellana HOM05D003533 ORTHO05D004009 3.8e-09 64.7 82 52.4
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 5.0e-09 64.3 74 47.3
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.0e-09 64.3 73 52.1
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 5.0e-09 64.3 77 44.2
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 6.5e-09 63.9 74 47.3
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 6.5e-09 63.9 76 47.4
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 8.4e-09 63.5 74 50.0
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 8.4e-09 63.5 77 46.8
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.1e-08 63.2 81 49.4
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 1.1e-08 63.2 76 48.7
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 1.1e-08 63.2 85 43.5
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.1e-08 63.2 74 48.6
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 1.4e-08 62.8 79 46.8
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.4e-08 62.8 89 44.9
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.4e-08 62.8 80 46.2
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 1.4e-08 62.8 75 49.3
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.5e-08 62.0 72 48.6
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.2e-08 61.6 76 46.1
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 4.2e-08 61.2 71 46.5
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 4.2e-08 61.2 79 45.6
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 7.1e-08 60.5 74 47.3
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 9.3e-08 60.1 81 42.0
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 9.3e-08 60.1 81 42.0
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.2e-07 59.7 76 47.4
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 2.1e-07 58.9 84 44.0
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 2.1e-07 58.9 80 45.0
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.7e-07 58.5 78 48.7
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 2.7e-07 58.5 81 43.2
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.7e-07 58.5 81 46.9
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.7e-07 58.5 81 46.9
Actinidia34960 Actinidia chinensis HOM05D003533 ORTHO05D004009 3.5e-07 58.2 49 63.3
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 4.6e-07 57.8 74 47.3
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 4.6e-07 57.8 81 44.4
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 6.1e-07 57.4 80 45.0
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 6.1e-07 57.4 72 47.2
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 6.1e-07 57.4 80 46.2
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 7.9e-07 57.0 85 44.7
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 7.9e-07 57.0 83 41.0
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 7.9e-07 57.0 81 42.0
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 1.8e-06 55.8 62 54.8
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 2.3e-06 55.5 77 42.9
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 3.0e-06 55.1 85 41.2
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 3.0e-06 55.1 83 38.6
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 3.9e-06 54.7 72 44.4
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 3.9e-06 54.7 82 42.7
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 3.9e-06 54.7 72 44.4
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 3.9e-06 54.7 75 44.0
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 5.1e-06 54.3 88 39.8
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 5.1e-06 54.3 81 44.4
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 6.7e-06 53.9 82 42.7
ATR0824G240 Amborella trichopoda HOM05D003533 ORTHO05D004009 8.7e-06 53.5 84 41.7
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 8.7e-06 53.5 79 49.4


User provided reference genes

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