Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.6e-230 801.6 377 100.0
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.9e-204 715.7 377 88.3
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 9.4e-196 686.8 377 84.9
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 7.4e-193 677.2 377 83.8
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 2.9e-189 665.2 360 85.3
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.4e-170 603.2 377 73.7
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.4e-167 593.2 378 70.9
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 2.4e-167 592.4 380 72.6
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 9.4e-164 580.5 378 71.4
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.6e-163 579.7 378 71.7
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 4.7e-163 578.2 379 70.4
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 1.8e-162 576.2 378 69.8
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.5e-161 573.2 385 69.9
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 2.4e-159 565.8 377 68.2
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 5.4e-159 564.7 377 67.6
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 2.7e-158 562.4 379 68.6
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 9.5e-156 553.9 377 67.4
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 4.7e-155 551.6 406 64.5
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.0e-154 550.4 380 66.6
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.7e-152 543.1 379 66.0
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 4.9e-152 541.6 379 65.7
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 6.4e-152 541.2 386 65.3
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.4e-151 540.0 380 65.0
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.8e-151 539.7 379 65.7
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.4e-151 539.3 385 64.4
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 3.2e-151 538.9 378 65.9
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 5.4e-151 538.1 378 65.9
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 7.0e-151 537.7 307 81.1
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 9.2e-151 537.3 378 65.3
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.0e-150 536.2 400 63.8
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 2.7e-150 535.8 381 66.7
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 2.7e-150 535.8 381 66.7
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 2.7e-150 535.8 381 65.6
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 5.9e-150 534.6 377 66.6
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 1.3e-149 533.5 381 65.1
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.3e-149 532.7 378 65.3
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 3.9e-149 531.9 378 65.3
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 6.6e-149 531.2 379 64.6
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.9e-148 529.6 385 64.2
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 7.3e-148 527.7 382 64.9
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 7.3e-148 527.7 378 65.3
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 2.1e-147 526.2 400 62.5
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 4.7e-147 525.0 347 71.2
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 1.4e-146 523.5 377 64.7
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.2e-145 520.4 378 65.6
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.7e-144 516.5 378 65.1
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 2.2e-144 516.2 378 64.8
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 2.9e-144 515.8 378 63.5
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 4.9e-144 515.0 394 63.7
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.9e-143 513.1 379 63.1
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 3.2e-143 512.3 384 64.8
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 4.1e-143 511.9 378 65.3
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 5.4e-143 511.5 378 64.6
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 7.0e-143 511.1 381 63.0
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.2e-142 510.4 469 55.0
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 2.7e-142 509.2 405 57.5
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 3.9e-141 505.4 349 68.2
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 6.6e-141 504.6 383 62.9
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 2.5e-140 502.7 378 62.2
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 3.3e-140 502.3 378 62.4
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 7.3e-140 501.1 361 64.3
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 9.5e-140 500.7 381 62.2
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.8e-138 496.5 378 63.0
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.3e-138 496.1 380 62.4
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 2.3e-138 496.1 381 62.2
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 3.1e-138 495.7 383 63.4
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.2e-137 493.8 378 63.8
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 2.6e-137 492.7 381 61.9
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.2e-136 489.6 378 59.3
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 2.3e-133 479.6 345 63.8
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 2.5e-132 476.1 378 59.8
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 8.1e-131 471.1 378 59.5
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.5e-129 466.8 378 59.3
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 2.9e-128 462.6 320 66.6
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 3.7e-128 462.2 362 58.8
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 7.1e-127 458.0 350 60.3
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 9.2e-127 457.6 424 54.5
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 2.7e-126 456.1 378 56.9
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 4.6e-126 455.3 378 55.6
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 4.7e-123 445.3 394 56.3
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 3.0e-117 426.0 353 58.9
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 2.5e-116 422.9 384 56.2
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 5.8e-113 411.8 275 71.3
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 9.9e-113 411.0 309 60.5
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 3.2e-111 406.0 338 59.2
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 4.9e-104 382.1 380 48.4
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 3.0e-101 372.9 390 48.5
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 5.6e-100 368.6 286 61.5
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 9.0e-98 361.3 392 45.9
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.0e-97 360.1 248 66.5
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.1e-95 354.4 378 45.8
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.9e-95 353.6 262 64.1
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.8e-93 347.1 302 56.6
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 3.1e-90 336.3 397 44.1
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 1.8e-85 320.5 377 45.1
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.9e-84 317.0 380 42.4
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.8e-82 310.5 308 53.9
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.2e-75 287.0 338 44.7
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.7e-75 286.2 358 41.9
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 6.1e-70 268.9 216 58.3
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 1.0e-45 188.3 313 34.5
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.1e-42 178.3 139 64.7
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 6.6e-40 169.1 381 31.0
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 8.6e-40 168.7 381 30.7
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.9e-39 167.5 381 30.4
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 1.2e-38 164.9 372 30.1
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 2.1e-38 164.1 370 31.6
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.0e-37 161.8 376 30.1
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.0e-37 161.8 379 32.5
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.4e-37 161.4 379 32.5
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 1.4e-37 161.4 379 32.2
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 3.0e-37 160.2 379 32.2
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 4.0e-37 159.8 175 48.6
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 4.0e-37 159.8 376 30.9
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 4.0e-37 159.8 381 31.0
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 6.8e-37 159.1 376 31.4
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 8.9e-37 158.7 376 31.6
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 8.9e-37 158.7 376 31.6
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 1.2e-36 158.3 374 31.3
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 2.0e-36 157.5 386 32.1
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 5.7e-36 156.0 371 30.2
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 7.5e-36 155.6 376 31.4
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 7.5e-36 155.6 372 31.7
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 9.8e-36 155.2 376 30.9
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.3e-35 154.8 152 47.4
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 1.3e-35 154.8 376 31.1
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 1.3e-35 154.8 376 31.1
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 2.2e-35 154.1 374 30.5
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.2e-35 154.1 376 32.2
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 2.2e-35 154.1 370 31.4
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 3.7e-35 153.3 379 31.4
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 4.9e-35 152.9 353 31.4
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 8.3e-35 152.1 374 31.6
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.1e-34 151.8 376 30.6
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 1.1e-34 151.8 369 31.4
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 1.4e-34 151.4 380 31.1
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 1.8e-34 151.0 374 31.6
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 2.4e-34 150.6 376 31.1
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 3.2e-34 150.2 379 28.5
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 3.2e-34 150.2 376 30.6
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 3.2e-34 150.2 374 31.3
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 3.2e-34 150.2 379 31.4
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 3.2e-34 150.2 374 31.6
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 5.4e-34 149.4 373 29.2
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 5.4e-34 149.4 373 31.6
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 5.4e-34 149.4 373 29.8
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 7.0e-34 149.1 376 29.8
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 9.2e-34 148.7 373 27.9
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.2e-33 148.3 375 29.6
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.6e-33 147.9 373 28.7
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.6e-33 147.9 193 45.1
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 2.7e-33 147.1 371 29.6
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 2.7e-33 147.1 380 30.8
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 3.5e-33 146.7 370 28.1
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 3.5e-33 146.7 370 28.1
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 4.6e-33 146.4 368 30.2
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 4.6e-33 146.4 380 31.1
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 3.0e-32 143.7 374 28.1
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 6.6e-32 142.5 379 30.3
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 1.6e-30 137.9 369 27.6
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 1.4e-29 134.8 382 28.0
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 9.8e-28 128.6 132 46.2
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.4e-26 124.8 371 26.7
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 3.2e-26 123.6 372 25.5
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 5.4e-26 122.9 86 67.4
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.3e-24 118.2 374 27.3
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.3e-24 118.2 439 26.4
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.3e-24 117.5 297 31.3
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 2.5e-23 114.0 72 68.1
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 7.3e-23 112.5 124 50.0
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 3.6e-22 110.2 250 31.6
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 4.7e-22 109.8 73 64.4
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 8.9e-21 105.5 120 45.0
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.9e-19 100.5 108 45.4
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 4.9e-19 99.8 82 52.4
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 2.3e-16 90.9 207 30.9
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 3.6e-14 83.6 72 56.9
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 6.2e-14 82.8 63 60.3
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 1.7e-11 74.7 54 59.3
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 2.2e-11 74.3 190 25.8
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 1.3e-08 65.1 123 36.6
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 3.0e-08 63.9 50 60.0
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 3.0e-08 63.9 38 73.7
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 1.9e-07 61.2 35 71.4


User provided reference genes

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