Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 1.9e-107 392.5 200 100.0
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 4.1e-81 305.1 200 80.5
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.1e-78 297.0 195 78.5
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 5.5e-78 294.7 195 77.9
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 7.2e-78 294.3 195 78.5
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 4.4e-75 285.0 189 81.0
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 2.2e-63 246.1 165 77.6
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 1.7e-58 229.9 204 63.7
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 2.0e-56 223.0 208 58.7
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 7.7e-56 221.1 208 56.7
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 2.2e-55 219.5 210 60.0
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.8e-52 209.9 214 53.7
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 4.0e-52 208.8 203 56.7
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 6.8e-52 208.0 218 54.6
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 1.2e-51 207.2 216 54.2
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 1.5e-51 206.8 164 65.2
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 9.8e-51 204.1 216 54.2
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 1.3e-50 203.8 175 62.3
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 2.8e-50 202.6 205 56.6
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 6.3e-50 201.4 214 54.7
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 8.3e-50 201.1 178 63.5
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 4.1e-49 198.7 206 53.4
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 1.2e-48 197.2 205 55.1
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 3.5e-48 195.7 199 52.8
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 5.9e-48 194.9 214 52.8
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 5.9e-48 194.9 175 58.9
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 5.9e-48 194.9 205 52.7
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 1.0e-47 194.1 212 53.3
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.0e-47 194.1 196 52.0
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 1.0e-47 194.1 226 51.8
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.3e-47 193.7 178 57.3
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 1.7e-47 193.4 224 50.9
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 2.9e-47 192.6 178 56.7
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 6.5e-47 191.4 226 50.0
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 6.5e-47 191.4 176 58.5
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.1e-46 190.7 179 58.7
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.1e-46 190.7 192 58.3
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 1.5e-46 190.3 231 52.8
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 1.9e-46 189.9 201 54.7
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 4.2e-46 188.7 226 49.1
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 4.2e-46 188.7 177 55.9
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 5.5e-46 188.3 177 55.4
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 9.5e-46 187.6 225 48.4
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.6e-45 186.8 197 52.8
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 1.6e-45 186.8 201 56.7
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.4e-44 183.7 178 56.2
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 1.4e-44 183.7 212 48.1
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 1.8e-44 183.3 198 52.5
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 6.8e-44 181.4 177 59.3
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 2.0e-43 179.9 201 50.7
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.0e-43 179.9 201 50.7
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 2.6e-43 179.5 214 49.1
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 9.8e-43 177.6 195 51.8
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.7e-42 176.8 195 51.3
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 2.2e-42 176.4 212 47.6
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 6.3e-42 174.9 198 52.0
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 1.1e-41 174.1 203 49.8
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 1.1e-41 174.1 182 50.5
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.4e-41 173.7 180 52.8
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 1.4e-41 173.7 204 50.5
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 1.4e-41 173.7 171 55.6
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 2.4e-41 172.9 178 55.1
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 4.1e-41 172.2 203 46.3
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 7.0e-41 171.4 211 45.5
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 7.0e-41 171.4 207 52.2
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 9.2e-41 171.0 173 50.3
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 2.0e-40 169.9 192 49.5
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 5.9e-40 168.3 211 46.0
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 5.9e-40 168.3 209 45.5
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 1.0e-39 167.5 173 52.0
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.3e-39 167.2 265 43.8
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.3e-39 167.2 205 48.3
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 1.7e-39 166.8 198 51.5
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 8.6e-39 164.5 208 45.2
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 8.6e-39 164.5 154 57.1
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.9e-38 163.3 206 44.2
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 5.6e-38 161.8 209 45.9
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 1.2e-37 160.6 214 44.4
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 1.2e-37 160.6 177 52.0
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 4.7e-37 158.7 183 52.5
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 3.0e-36 156.0 171 50.3
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 2.0e-35 153.3 183 49.7
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 3.7e-34 149.1 166 51.8
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 3.7e-34 149.1 219 42.5
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 8.3e-34 147.9 162 50.6
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 1.8e-33 146.7 162 53.1
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 3.2e-33 146.0 140 60.0
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 4.1e-33 145.6 128 56.2
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 4.1e-33 145.6 186 44.6
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 4.1e-33 145.6 292 37.7
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 1.6e-32 143.7 126 57.1
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 5.6e-30 135.2 152 49.3
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 4.7e-29 132.1 158 46.2
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 1.4e-28 130.6 175 48.0
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 1.2e-27 127.5 158 47.5
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 2.6e-27 126.3 130 54.6
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 4.4e-27 125.6 159 47.8
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 5.4e-25 118.6 164 44.5
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 1.6e-24 117.1 147 49.0
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 1.0e-23 114.4 202 37.6
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 3.3e-22 109.4 137 45.3
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 1.5e-19 100.5 164 37.2
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 9.5e-14 81.3 102 51.0
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 2.1e-13 80.1 103 43.7
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 1.5e-11 73.9 75 48.0
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 1.5e-11 73.9 75 48.0
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 8.4e-10 68.2 127 34.6
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.4e-09 66.6 79 48.1
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 5.1e-07 58.9 78 44.9


User provided reference genes

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