Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 2.3e-171 605.5 317 100.0
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 3.5e-135 485.3 321 82.2
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 1.4e-128 463.4 294 84.0
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 4.1e-128 461.8 314 76.8
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.0e-126 457.2 314 76.1
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 6.6e-126 454.5 314 75.2
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 1.4e-112 410.2 261 82.4
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 1.9e-112 409.8 324 70.7
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.5e-111 405.6 317 69.4
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 4.6e-111 405.2 330 69.7
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 1.7e-110 403.3 317 69.7
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 8.6e-110 401.0 327 69.4
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.1e-109 400.6 315 69.5
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 2.5e-109 399.4 281 76.2
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 4.3e-109 398.7 320 68.1
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 2.1e-108 396.4 323 70.0
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 3.6e-108 395.6 285 74.4
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 6.2e-108 394.8 258 80.2
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 8.1e-108 394.4 323 67.5
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 4.4e-106 388.7 259 77.6
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 7.6e-106 387.9 329 67.5
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 1.7e-105 386.7 319 68.3
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 4.9e-105 385.2 321 68.8
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 1.4e-104 383.6 324 66.0
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 2.4e-104 382.9 325 67.7
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 2.4e-104 382.9 323 66.9
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 3.2e-104 382.5 317 68.5
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 1.6e-103 380.2 316 67.1
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 4.6e-103 378.6 255 78.0
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 6.0e-103 378.3 261 75.1
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 6.0e-103 378.3 308 67.5
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 1.7e-102 376.7 325 66.2
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 1.7e-102 376.7 328 66.2
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 1.9e-101 373.2 315 67.6
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 2.5e-101 372.9 324 65.4
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 2.5e-101 372.9 240 80.0
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 3.3e-101 372.5 256 75.8
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 4.3e-101 372.1 263 71.9
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 7.3e-101 371.3 286 67.8
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 2.1e-100 369.8 265 72.8
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 2.8e-100 369.4 306 67.6
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 3.6e-100 369.0 266 74.1
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 1.8e-99 366.7 268 72.8
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 2.4e-99 366.3 259 73.4
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 2.4e-99 366.3 316 64.2
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 5.2e-99 365.2 254 74.4
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 3.4e-98 362.5 320 62.8
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 2.9e-97 359.4 261 72.4
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 4.9e-97 358.6 320 63.4
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 8.4e-97 357.8 319 63.0
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 1.4e-96 357.1 277 69.0
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 1.9e-96 356.7 322 61.5
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 2.4e-96 356.3 332 61.1
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 2.4e-96 356.3 302 64.9
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 2.4e-96 356.3 323 61.9
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 4.2e-96 355.5 268 69.0
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 4.2e-96 355.5 319 61.1
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 1.6e-95 353.6 320 62.2
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 2.1e-95 353.2 320 62.5
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 2.7e-95 352.8 235 77.9
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 4.6e-95 352.1 237 76.4
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 1.3e-94 350.5 324 62.3
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.7e-94 350.1 265 70.6
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 1.5e-93 347.1 319 62.1
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 3.3e-93 345.9 331 61.0
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 3.3e-93 345.9 276 67.4
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 3.3e-93 345.9 276 67.4
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 3.3e-93 345.9 243 74.5
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 7.3e-93 344.7 331 61.0
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 1.6e-92 343.6 316 59.8
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 6.2e-92 341.7 267 68.5
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 6.2e-92 341.7 315 58.7
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 8.1e-92 341.3 212 81.1
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 8.1e-92 341.3 323 61.0
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 1.1e-91 340.9 266 68.8
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 9.0e-91 337.8 335 59.4
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 9.0e-91 337.8 235 74.5
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 1.5e-90 337.0 237 72.6
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 1.5e-90 337.0 290 65.2
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 2.0e-90 336.7 309 60.5
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 3.4e-90 335.9 321 58.3
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 5.8e-90 335.1 258 67.8
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 2.9e-89 332.8 198 84.3
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 3.8e-89 332.4 322 59.3
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 1.1e-88 330.9 270 65.2
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 5.4e-88 328.6 212 76.9
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 1.6e-87 327.0 271 64.9
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 2.7e-87 326.2 266 65.8
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 2.7e-87 326.2 199 80.4
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 7.9e-87 324.7 243 70.0
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 1.3e-86 323.9 241 68.9
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 5.1e-86 322.0 313 59.4
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 1.9e-85 320.1 231 71.0
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 2.5e-85 319.7 208 77.4
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.1e-83 314.3 217 75.1
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 4.0e-83 312.4 296 60.1
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 1.5e-82 310.5 256 65.6
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 9.9e-82 307.8 294 60.9
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 3.2e-80 302.8 210 73.8
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 1.6e-79 300.4 259 61.4
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 3.5e-79 299.3 203 71.4
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 8.7e-78 294.7 239 64.4
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 2.5e-77 293.1 284 56.0
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 2.7e-71 273.1 226 61.9
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 2.6e-66 256.5 199 63.3
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 2.5e-64 250.0 211 58.3
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 4.2e-64 249.2 218 57.8
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 4.3e-61 239.2 202 57.9
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 4.1e-59 232.6 252 50.0
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 9.4e-56 221.5 150 73.3
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 1.0e-54 218.0 210 53.8
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 3.9e-54 216.1 203 58.1
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 1.3e-36 157.9 145 62.8
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 4.8e-36 156.0 178 49.4
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 3.5e-34 149.8 110 66.4
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 4.7e-31 139.4 180 47.2
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 5.7e-21 105.9 77 70.1
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 6.3e-20 102.4 77 70.1
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 1.7e-12 77.8 50 80.0
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 5.0e-09 66.2 38 89.5
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 5.6e-08 62.8 51 62.7


User provided reference genes

Program Settings