Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 1.0e-60 236.5 113 100.0
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 6.1e-50 200.7 111 82.0
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 3.2e-35 151.8 112 63.4
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 3.8e-28 128.3 116 60.3
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 3.3e-27 125.2 116 59.5
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 3.0e-25 118.6 112 54.5
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 5.2e-25 117.9 112 54.5
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 9.8e-24 113.6 114 50.0
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 1.4e-22 109.8 132 48.5
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 1.7e-20 102.8 132 47.0
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 1.9e-19 99.4 100 48.0
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 1.2e-18 96.7 100 46.0
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 2.8e-18 95.5 107 44.9
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 3.6e-18 95.1 107 49.5
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 5.2e-17 91.3 117 41.0
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 2.6e-16 89.0 108 43.5
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 2.6e-16 89.0 53 69.8
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 4.4e-16 88.2 107 42.1
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 5.8e-16 87.8 119 37.0
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 5.8e-16 87.8 56 62.5
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 7.5e-16 87.4 50 70.0
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 1.7e-15 86.3 125 40.8
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 2.9e-15 85.5 106 45.3
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 3.7e-15 85.1 107 39.3
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 4.9e-15 84.7 121 40.5
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 8.3e-15 84.0 118 44.9
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 2.4e-14 82.4 59 57.6
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 3.2e-14 82.0 62 54.8
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 4.1e-14 81.6 93 39.8
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 5.4e-14 81.3 93 38.7
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 7.0e-14 80.9 62 56.5
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 9.2e-14 80.5 62 56.5
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 1.6e-13 79.7 126 40.5
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 2.7e-13 79.0 60 60.0
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 1.3e-12 76.6 107 38.3
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 1.3e-12 76.6 121 43.0
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 1.3e-12 76.6 110 41.8
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 6.6e-12 74.3 52 61.5
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 6.6e-12 74.3 52 61.5
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 6.6e-12 74.3 52 61.5
Nn3g17018 Nelumbo nucifera HOM05D021434 ORTHO05D009619 6.6e-12 74.3 73 46.6
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 1.1e-11 73.6 48 68.8
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 1.5e-11 73.2 50 58.0
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 2.5e-11 72.4 117 39.3
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 3.3e-11 72.0 52 59.6
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 3.3e-11 72.0 52 59.6
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 3.3e-11 72.0 140 40.7
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 4.3e-11 71.6 45 62.2
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 4.3e-11 71.6 45 62.2
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 4.3e-11 71.6 45 62.2
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 4.3e-11 71.6 45 62.2
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 4.3e-11 71.6 140 40.7
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 4.3e-11 71.6 140 40.7
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 5.6e-11 71.2 52 55.8
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 5.6e-11 71.2 63 49.2
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 9.5e-11 70.5 45 60.0
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 9.5e-11 70.5 52 59.6
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 1.2e-10 70.1 89 39.3
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 1.2e-10 70.1 42 61.9
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 1.2e-10 70.1 50 60.0
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 1.6e-10 69.7 61 50.8
Ciclev10017153m.g Citrus clementina HOM05D007757 ORTHO05D009619 2.1e-10 69.3 117 41.9
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 2.1e-10 69.3 137 41.6
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 3.6e-10 68.6 43 60.5
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 4.7e-10 68.2 45 60.0
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 4.7e-10 68.2 41 63.4
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 8.1e-10 67.4 55 50.9
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 8.1e-10 67.4 55 50.9
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 8.1e-10 67.4 55 50.9
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 8.1e-10 67.4 55 50.9
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 8.1e-10 67.4 55 50.9
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 1.1e-09 67.0 46 56.5
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.4e-09 66.6 38 63.2
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.4e-09 66.6 42 57.1
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 1.4e-09 66.6 46 56.5
Nn4g23846 Nelumbo nucifera HOM05D021434 ORTHO05D009619 2.3e-09 65.9 103 35.9
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 2.3e-09 65.9 112 33.9
Nn3g17848 Nelumbo nucifera HOM05D021434 ORTHO05D009619 5.2e-09 64.7 102 34.3
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.5e-08 63.2 40 62.5
BcaC05g26671 Brassica carinata HOM05D007757 ORTHO05D009619 5.8e-08 61.2 41 58.5
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 5.8e-08 61.2 40 60.0
BcaC05g26463 Brassica carinata HOM05D007757 ORTHO05D009619 1.7e-07 59.7 41 56.1
A09p39320 Brassica napus HOM05D007757 ORTHO05D009619 1.7e-07 59.7 41 56.1
C05p25050 Brassica napus HOM05D007757 ORTHO05D009619 1.7e-07 59.7 41 56.1
BolC5t31238H Brassica oleracea HOM05D007757 ORTHO05D009619 1.7e-07 59.7 41 56.1
BraA09t39435Z Brassica rapa HOM05D007757 ORTHO05D009619 1.7e-07 59.7 41 56.1
Lj5g0000209 Lotus japonicus HOM05D007757 ORTHO05D009619 1.7e-07 59.7 64 45.3
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 1.1e-06 57.0 51 39.2
Sc11g0003440 Simmondsia chinensis HOM05D007757 ORTHO05D009619 1.4e-06 56.6 119 33.6
Aqoxy3G00295 Aquilegia oxysepala HOM05D021434 ORTHO05D009619 5.4e-06 54.7 107 35.5
EL10Ac6g14396 Beta vulgaris HOM05D007757 ORTHO05D009619 5.4e-06 54.7 60 43.3


User provided reference genes

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