Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1747.3 840 100.0
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1545.4 840 88.9
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1530.4 835 87.9
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1529.6 835 87.8
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1391.7 836 78.7
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1390.9 833 79.0
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1390.9 842 78.1
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1382.1 835 78.6
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1370.1 841 79.0
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1367.8 832 77.3
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1366.7 840 77.6
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1359.4 832 77.2
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1356.7 841 77.8
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1335.5 835 75.8
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1328.9 971 67.1
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1321.2 835 75.0
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1320.8 837 74.3
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1320.1 843 75.0
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1318.9 833 74.8
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1315.4 836 74.6
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1313.1 836 73.7
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1312.0 836 73.9
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1310.8 837 74.0
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1310.8 842 74.0
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1308.1 837 73.5
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1305.4 835 74.9
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1303.9 833 73.7
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1303.1 841 74.0
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1302.7 839 74.0
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1302.3 838 75.2
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1302.3 830 74.7
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1301.2 842 73.6
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1300.0 830 74.6
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1300.0 832 74.0
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1299.6 830 74.6
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1299.6 832 74.8
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1299.3 833 74.3
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1297.3 845 73.7
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1294.6 830 74.6
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1292.3 836 74.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1291.6 837 72.8
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1289.2 840 73.5
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1288.1 833 73.7
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1287.3 835 73.5
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1286.9 842 71.9
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1282.7 842 71.9
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1279.6 831 72.7
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1278.8 839 72.1
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1276.2 833 72.4
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1274.6 831 72.9
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1273.5 839 72.2
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1272.7 833 72.0
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1271.1 831 72.9
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1270.0 842 72.0
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1270.0 826 74.0
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1266.9 838 72.2
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1265.4 840 73.1
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1264.6 833 72.1
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1263.1 831 70.9
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1256.9 874 69.7
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1256.5 839 71.2
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1254.6 832 71.2
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1248.8 831 71.6
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1246.1 847 71.0
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1242.6 835 70.9
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1239.2 840 70.7
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1231.9 841 69.1
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1228.4 844 69.4
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1223.8 783 75.1
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1223.4 855 68.5
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1222.6 833 69.0
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1218.8 830 70.5
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1212.6 844 69.3
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1209.5 840 69.3
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1209.1 841 69.3
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1208.4 842 68.9
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1208.0 843 69.4
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1205.3 843 69.2
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1205.3 844 69.3
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1201.4 844 68.1
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1197.2 841 68.7
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1196.4 840 67.7
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1196.0 842 68.3
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1191.4 845 68.3
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1188.7 841 68.6
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1186.0 845 67.9
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1179.5 791 71.4
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1177.2 853 67.4
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1176.8 761 73.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1173.7 846 66.9
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1170.2 937 63.0
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1160.6 860 66.2
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1142.1 656 84.6
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1133.6 839 63.2
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1127.1 831 64.6
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1109.4 831 64.0
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1102.0 835 62.4
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 4.1e-300 1034.6 831 61.3
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.3e-298 1029.6 672 72.5
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 4.8e-285 984.6 833 59.8
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.1e-276 953.7 584 76.9
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 6.6e-250 867.8 892 49.8
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 2.9e-245 852.4 862 49.5
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 4.1e-244 848.6 859 51.6
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 6.9e-223 778.1 830 50.1
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.0e-210 737.6 401 87.3
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 9.6e-209 731.1 465 77.8
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.0e-150 537.3 401 64.6
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 7.0e-143 512.3 367 65.9
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 3.5e-134 483.4 360 61.4
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 3.6e-123 446.8 264 79.5
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 7.4e-108 396.0 750 38.1
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 2.3e-101 374.4 1015 30.0
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.7e-101 372.9 231 75.3
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.4e-98 365.2 500 44.2
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 3.1e-98 364.0 867 33.4
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.0e-97 361.3 297 62.6
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 2.7e-94 350.9 1169 26.6
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.7e-94 350.9 305 55.1
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.3e-93 348.6 265 61.9
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 3.4e-89 334.0 193 80.8
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.7e-88 331.6 196 78.1
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 7.9e-86 322.8 192 79.2
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 2.8e-83 314.3 246 65.4
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 2.1e-70 271.6 569 34.3
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 2.3e-53 214.9 196 53.6
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 7.7e-49 199.9 578 28.5
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 7.7e-49 199.9 578 28.5
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 8.0e-46 189.9 153 60.1
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.0e-40 170.6 97 80.4
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 8.6e-40 169.9 127 65.4
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 9.5e-39 166.4 98 78.6
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.1e-30 138.7 77 81.8
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 3.6e-30 137.9 96 66.7
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 2.2e-27 128.6 73 79.5
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.1e-26 126.3 73 79.5
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 1.7e-24 119.0 215 38.1
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 7.3e-23 113.6 69 76.8
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.1e-21 108.2 62 69.4
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 3.4e-20 104.8 78 61.5
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 1.3e-19 102.8 112 51.8
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 2.9e-19 101.7 123 43.1
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.9e-19 101.7 64 71.9
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 2.1e-17 95.5 111 48.6
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.3e-16 92.8 53 75.5
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 3.3e-15 88.2 100 48.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.6e-14 85.9 59 57.6
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 2.9e-11 75.1 99 40.4
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 2.1e-09 68.9 86 46.5
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 2.5e-07 62.0 143 30.8
DCAR_007461 Daucus carota HOM05D000464 ORTHO05D006292 4.3e-07 61.2 147 28.6
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 1.2e-06 59.7 170 27.1
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 1.6e-06 59.3 172 25.6
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 2.8e-06 58.5 225 25.8
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 4.7e-06 57.8 149 26.8
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 6.2e-06 57.4 422 21.3
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 8.1e-06 57.0 127 30.7
Manes.06G112800 Manihot esculenta HOM05D000464 ORTHO05D006292 8.1e-06 57.0 145 27.6
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 8.1e-06 57.0 139 28.1
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 8.1e-06 57.0 139 28.1
Psat6g090360 Pisum sativum HOM05D005323 ORTHO05D006820 8.1e-06 57.0 118 29.7


User provided reference genes

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