Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G220500 Theobroma cacao HOM05D000003 ORTHO05D000022 2.6e-100 368.6 176 100.0
SGA_v2.0_scaffold245G44469 Striga asiatica HOM05D000003 ORTHO05D000022 3.4e-15 85.9 147 37.4
Atru.chr6.2380 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-12 76.6 102 37.3
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 7.9e-12 74.7 149 32.9
COL.COLO4_36152 Corchorus olitorius HOM05D000003 ORTHO05D000022 2.5e-10 69.7 124 34.7
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 4.3e-10 68.9 125 30.4
CARHR145030 Cardamine hirsuta HOM05D000003 ORTHO05D000022 5.6e-10 68.6 59 50.8
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 9.6e-10 67.8 132 30.3
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 9.6e-10 67.8 134 29.9
Ciclev10021474m.g Citrus clementina HOM05D000003 ORTHO05D000022 2.1e-09 66.6 125 36.0
RcHm_v2.0_Chr2g0132921 Rosa chinensis HOM05D000003 ORTHO05D000022 2.8e-09 66.2 126 31.0
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-09 65.5 125 34.4
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-09 65.5 125 28.8
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 6.2e-09 65.1 71 42.3
COL.COLO4_08472 Corchorus olitorius HOM05D000003 ORTHO05D000022 8.1e-09 64.7 97 36.1
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-08 63.9 147 27.9
Atru.chr8.829 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-08 63.9 125 27.2
Thecc.09G293900 Theobroma cacao HOM05D000003 ORTHO05D000022 1.4e-08 63.9 49 57.1
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-08 63.5 125 30.4
RcHm_v2.0_Chr7g0220091 Rosa chinensis HOM05D000003 ORTHO05D000022 1.8e-08 63.5 126 30.2
SGA_v2.0_scaffold245G44722 Striga asiatica HOM05D000155 ORTHO05D000022 1.8e-08 63.5 50 58.0
Atru.chr1.1759 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-08 62.4 100 33.0
Prupe.4G223300 Prunus persica HOM05D000279 ORTHO05D000022 4.0e-08 62.4 132 28.0
Atru.chr12.2455 Acer truncatum HOM05D000003 ORTHO05D000022 5.3e-08 62.0 147 27.9
AT5G42905 Arabidopsis thaliana HOM05D000003 ORTHO05D000022 5.3e-08 62.0 69 42.0
MBI12_g26631_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.3e-08 62.0 84 38.1
RcHm_v2.0_Chr2g0127141 Rosa chinensis HOM05D000003 ORTHO05D000022 5.3e-08 62.0 127 27.6
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 6.9e-08 61.6 125 29.6
CARHR213150 Cardamine hirsuta HOM05D000003 ORTHO05D000022 6.9e-08 61.6 51 47.1
COL.COLO4_03949 Corchorus olitorius HOM05D000155 ORTHO05D000022 6.9e-08 61.6 91 36.3
MBI05_g02409_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.9e-08 61.6 84 38.1
SHI10451 Sapria himalayana HOM05D000155 ORTHO05D000022 6.9e-08 61.6 149 27.5
TWI63G0844 Tripterygium wilfordii HOM05D000013 ORTHO05D000011 6.9e-08 61.6 105 30.5
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 9.0e-08 61.2 147 27.2
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-08 61.2 140 30.7
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-08 61.2 132 27.3
Atru.chr8.1687 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-08 61.2 126 31.0
CARHR181910 Cardamine hirsuta HOM05D000003 ORTHO05D000022 9.0e-08 61.2 54 46.3
Lj1g0013654 Lotus japonicus HOM05D000155 ORTHO05D000022 1.2e-07 60.8 130 30.0
RcHm_v2.0_Chr5g0041361 Rosa chinensis HOM05D000279 ORTHO05D000022 1.2e-07 60.8 90 38.9
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-07 60.5 127 28.3
CARHR035340 Cardamine hirsuta HOM05D000003 ORTHO05D000022 1.5e-07 60.5 56 44.6
COL.COLO4_03980 Corchorus olitorius HOM05D000155 ORTHO05D000022 1.5e-07 60.5 72 38.9
Lj5g0005529 Lotus japonicus HOM05D000003 ORTHO05D000022 1.5e-07 60.5 111 33.3
Lalb_Chr07g0182561 Lupinus albus HOM05D000155 ORTHO05D000022 1.5e-07 60.5 133 26.3
Lalb_Chr09g0330401 Lupinus albus HOM05D000155 ORTHO05D000022 1.5e-07 60.5 131 26.0
MBI11_g05091_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.5e-07 60.5 84 38.1
Atru.chr1.1754 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-07 60.1 122 31.1
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-07 60.1 126 28.6
FvH4_3g23491 Fragaria vesca HOM05D000279 ORTHO05D000957 2.0e-07 60.1 132 28.8
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-07 59.7 125 28.0
Atru.chr2.1762 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-07 59.7 126 26.2
Atru.chr7.259 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-07 59.7 125 28.0
arahy.Tifrunner.gnm1.ann1.0Q53RJ Arachis hypogaea HOM05D000155 ORTHO05D000022 2.6e-07 59.7 112 35.7
CSS0017504 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.6e-07 59.7 125 33.6
Atru.chr8.699 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-07 59.3 125 28.0
Prupe.1G291700 Prunus persica HOM05D000061 ORTHO05D000050 3.4e-07 59.3 71 42.3
QL10p065737 Quercus lobata HOM05D000155 ORTHO05D000022 4.5e-07 58.9 61 45.9
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 4.5e-07 58.9 57 40.4
RcHm_v2.0_Chr3g0472841 Rosa chinensis HOM05D000155 ORTHO05D000022 5.8e-07 58.5 51 49.0
RcHm_v2.0_Chr5g0041481 Rosa chinensis HOM05D000279 ORTHO05D000498 5.8e-07 58.5 135 28.1
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 7.6e-07 58.2 125 27.2
Atru.chr2.2394 Acer truncatum HOM05D000003 ORTHO05D000022 7.6e-07 58.2 132 28.0
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 7.6e-07 58.2 125 28.8
MBI19_g04941_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.6e-07 58.2 49 46.9
Thecc.03G101000 Theobroma cacao HOM05D007909 ORTHO05D000743 7.6e-07 58.2 171 27.5
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.6e-07 58.2 50 50.0
Actinidia31833 Actinidia chinensis HOM05D000155 ORTHO05D000022 9.9e-07 57.8 48 50.0
CARHR054120 Cardamine hirsuta HOM05D000003 ORTHO05D000022 9.9e-07 57.8 54 44.4
CARHR121910 Cardamine hirsuta HOM05D000155 ORTHO05D000022 9.9e-07 57.8 50 44.0
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.4 132 31.1
Atru.chr10.557 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-06 57.4 125 29.6
Atru.chr12.385 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-06 57.4 125 29.6
Actinidia01050 Actinidia chinensis HOM05D000155 ORTHO05D000022 1.3e-06 57.4 87 33.3
arahy.Tifrunner.gnm1.ann1.G0IJW6 Arachis hypogaea HOM05D000155 ORTHO05D000022 1.3e-06 57.4 74 40.5
MBI16_g42110_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-06 57.4 95 36.8
MBI19_g08859_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-06 57.4 83 34.9
MBI19_g26310_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-06 57.4 68 38.2
SHI38779 Sapria himalayana HOM05D000155 ORTHO05D000022 1.3e-06 57.4 53 49.1
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.3e-06 57.4 51 51.0
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 57.0 125 25.6
Atru.chr11.1243 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-06 57.0 153 26.1
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-06 57.0 156 28.2
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-06 57.0 132 30.3
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 1.7e-06 57.0 48 50.0
MBI08_g15714_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.7e-06 57.0 102 33.3
MBI18_g29378_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.7e-06 57.0 51 51.0
MBI18_g35717_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.7e-06 57.0 84 35.7
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 1.7e-06 57.0 76 35.5
RcHm_v2.0_Chr3g0472791 Rosa chinensis HOM05D000155 ORTHO05D000022 1.7e-06 57.0 72 34.7
Atru.chr3.1505 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-06 56.6 125 28.8
Atru.chr9.658 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-06 56.6 133 27.8
CARHR111550 Cardamine hirsuta HOM05D000003 ORTHO05D000022 2.2e-06 56.6 54 42.6
CsaV3_1G011700 Cucumis sativus L. HOM05D000155 ORTHO05D000022 2.2e-06 56.6 128 29.7
MBI04_g06615_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.2e-06 56.6 51 45.1
MBI15_g39376_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.2e-06 56.6 52 50.0
MBI16_g05639_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.2e-06 56.6 51 45.1
RcHm_v2.0_Chr6g0263381 Rosa chinensis HOM05D000155 ORTHO05D000022 2.2e-06 56.6 51 47.1
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-06 56.2 125 26.4
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.9e-06 56.2 69 40.6
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.9e-06 56.2 69 40.6
Lj1P685T53 Lonicera japonica HOM05D000155 ORTHO05D000022 2.9e-06 56.2 49 53.1
Lj1P687T17 Lonicera japonica HOM05D000155 ORTHO05D000022 2.9e-06 56.2 49 53.1
MBI03_g33003_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.9e-06 56.2 83 32.5
MBI07_g22360_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.9e-06 56.2 84 32.1
MBI14_g13525_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.9e-06 56.2 49 53.1
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 2.9e-06 56.2 49 51.0
Sabra16G0000700 Salix brachista HOM05D060723 ORTHO05D000022 2.9e-06 56.2 143 25.2
AUR62012503 Chenopodium quinoa HOM05D000155 ORTHO05D000022 3.8e-06 55.8 70 38.6
COL.COLO4_10353 Corchorus olitorius HOM05D000003 ORTHO05D000006 3.8e-06 55.8 145 29.7
FvH4_3g23482 Fragaria vesca HOM05D000279 ORTHO05D000022 3.8e-06 55.8 53 49.1
FvH4_6g18164 Fragaria vesca HOM05D000003 ORTHO05D000022 3.8e-06 55.8 53 49.1
MBI01_g01262_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.8e-06 55.8 50 52.0
MBI10_g04436_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.8e-06 55.8 111 35.1
MBI18_g23784_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.8e-06 55.8 51 43.1
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 55.5 126 25.4
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 4.9e-06 55.5 126 24.6
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 4.9e-06 55.5 126 27.0
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 4.9e-06 55.5 141 25.5
Actinidia24692 Actinidia chinensis HOM05D000155 ORTHO05D000022 4.9e-06 55.5 48 45.8
Actinidia37600 Actinidia chinensis HOM05D025569 ORTHO05D000022 4.9e-06 55.5 50 50.0
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-06 55.5 63 38.1
CARHR118730 Cardamine hirsuta HOM05D000003 ORTHO05D000022 4.9e-06 55.5 74 36.5
AUR62014692 Chenopodium quinoa HOM05D000155 ORTHO05D000022 4.9e-06 55.5 70 38.6
MBI04_g43365_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.9e-06 55.5 58 44.8
MBI16_g07270_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.9e-06 55.5 84 38.1
MBI18_g13460_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.9e-06 55.5 56 50.0
Nitab4.5_0000062g0590 Nicotiana tabacum HOM05D000155 ORTHO05D000022 4.9e-06 55.5 46 54.3
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 6.4e-06 55.1 124 26.6
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 6.4e-06 55.1 145 25.5
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.4e-06 55.1 108 32.4
Cpa.g.sc1.70 Carica papaya HOM05D010740 ORTHO05D010953 6.4e-06 55.1 87 32.2
Lj1P688T36 Lonicera japonica HOM05D000155 ORTHO05D000022 6.4e-06 55.1 49 53.1
Lalb_Chr17g0341421 Lupinus albus HOM05D014548 ORTHO05D016940 6.4e-06 55.1 129 31.0
MBI13_g15302_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.4e-06 55.1 49 49.0
MBI13_g43496_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.4e-06 55.1 84 35.7
MBI15_g20077_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.4e-06 55.1 85 37.6
MBI15_g26834_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.4e-06 55.1 49 42.9
MD07G1021300 Malus domestica HOM05D000155 ORTHO05D000022 6.4e-06 55.1 49 49.0
Prupe.6G123500 Prunus persica HOM05D000003 ORTHO05D000022 6.4e-06 55.1 49 51.0
Sopen01g016010 Solanum pennellii HOM05D000003 ORTHO05D000022 6.4e-06 55.1 49 49.0
Atru.chr10.394 Acer truncatum HOM05D000003 ORTHO05D000022 8.4e-06 54.7 126 24.6
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 8.4e-06 54.7 123 30.1
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 8.4e-06 54.7 51 49.0
CARHR105380 Cardamine hirsuta HOM05D000003 ORTHO05D000022 8.4e-06 54.7 54 44.4
Cpa.g.sc263.16 Carica papaya HOM05D000003 ORTHO05D000022 8.4e-06 54.7 79 39.2
AUR62019983 Chenopodium quinoa HOM05D000577 ORTHO05D001093 8.4e-06 54.7 82 37.8
COL.COLO4_27635 Corchorus olitorius HOM05D000003 ORTHO05D000022 8.4e-06 54.7 131 29.0
COL.COLO4_27741 Corchorus olitorius HOM05D000003 ORTHO05D002259 8.4e-06 54.7 101 32.7
MBI01_g21238_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.4e-06 54.7 51 43.1
MBI03_g26337_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.4e-06 54.7 84 34.5
MBI19_g04943_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.4e-06 54.7 52 48.1
MBI19_g34996_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.4e-06 54.7 49 44.9
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 8.4e-06 54.7 80 37.5
Psat7g185880 Pisum sativum HOM05D047273 ORTHO05D000022 8.4e-06 54.7 105 29.5
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 8.4e-06 54.7 130 25.4
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 8.4e-06 54.7 130 25.4
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 8.4e-06 54.7 127 28.3
RcHm_v2.0_Chr7g0200931 Rosa chinensis HOM05D000003 ORTHO05D000022 8.4e-06 54.7 50 48.0
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 8.4e-06 54.7 125 26.4
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 8.4e-06 54.7 125 26.4


User provided reference genes

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