Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 7.1e-69 263.8 136 100.0
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 4.2e-37 158.3 132 61.4
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 1.2e-36 156.8 132 62.1
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 4.0e-32 141.7 124 62.9
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 9.3e-29 130.6 130 56.9
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.9e-26 122.9 135 51.1
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 7.4e-26 120.9 139 52.5
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 9.7e-26 120.6 139 56.1
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.2e-25 119.4 136 47.8
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 3.7e-25 118.6 136 56.6
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.4e-24 115.9 129 48.1
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 5.3e-24 114.8 135 45.2
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 1.2e-23 113.6 142 52.1
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.5e-23 113.2 124 45.2
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.6e-23 112.5 125 48.8
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 7.6e-23 110.9 145 44.8
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 7.6e-23 110.9 134 46.3
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 1.0e-22 110.5 133 43.6
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 1.3e-22 110.2 139 46.8
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 1.3e-22 110.2 139 46.8
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 2.9e-22 109.0 122 45.1
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.0e-22 108.2 128 50.0
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 5.0e-22 108.2 122 47.5
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 6.5e-22 107.8 143 49.7
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.5e-22 107.8 143 49.7
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.5e-22 107.8 143 49.7
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.5e-22 107.5 143 49.7
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.5e-21 105.9 143 49.0
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 2.5e-21 105.9 134 43.3
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.2e-21 105.1 143 48.3
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 4.2e-21 105.1 144 45.8
Ciclev10017483m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.5e-21 104.8 135 50.4
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 5.5e-21 104.8 136 41.2
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 2.1e-20 102.8 134 42.5
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.7e-20 102.4 129 49.6
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 6.1e-20 101.3 122 38.5
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 1.0e-19 100.5 134 49.3
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 1.0e-19 100.5 127 49.6
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.4e-19 100.1 135 40.7
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 2.3e-19 99.4 137 44.5
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.3e-19 99.4 137 42.3
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 3.0e-19 99.0 147 48.3
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.0e-19 99.0 147 48.3
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 3.9e-19 98.6 134 41.8
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.9e-19 98.6 147 49.0
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.1e-19 98.2 147 49.0
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.1e-18 97.1 120 46.7
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 1.5e-18 96.7 133 39.1
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.5e-18 95.9 136 47.8
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.3e-18 95.5 147 46.9
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.7e-18 94.7 146 46.6
Eucgr.G02232 Eucalyptus grandis HOM05D004062 ORTHO05D004417 7.4e-18 94.4 125 44.0
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 1.3e-17 93.6 147 46.3
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 1.7e-17 93.2 137 45.3
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.2e-17 92.8 137 38.7
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 2.2e-17 92.8 113 49.6
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 2.2e-17 92.8 122 44.3
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.2e-17 92.8 135 44.4
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 2.2e-17 92.8 144 47.2
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 2.8e-17 92.4 136 38.2
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 2.8e-17 92.4 136 40.4
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 3.7e-17 92.0 124 40.3
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 4.8e-17 91.7 122 37.7
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 8.2e-17 90.9 122 37.7
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.2e-17 90.9 144 45.8
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.1e-16 90.5 133 40.6
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 1.4e-16 90.1 135 43.7
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.4e-16 90.1 130 38.5
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.1e-16 88.6 128 47.7
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 5.3e-16 88.2 126 42.9
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 5.3e-16 88.2 136 40.4
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.1e-16 87.4 145 45.5
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 1.2e-15 87.0 132 38.6
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 1.2e-15 87.0 145 44.8
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.0e-15 86.3 136 39.7
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 2.6e-15 85.9 124 41.9
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 2.6e-15 85.9 126 42.1
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.5e-15 85.1 124 38.7
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.7e-14 83.2 123 41.5
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.7e-14 83.2 133 39.8
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.7e-14 83.2 136 42.6
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.7e-14 83.2 121 43.0
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.2e-14 82.8 127 45.7
CANSAT01G2259 Cannabis sativa HOM05D004062 ORTHO05D004417 3.8e-14 82.0 135 42.2
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 3.8e-14 82.0 133 39.8
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 8.5e-14 80.9 133 39.1
Cc11_g09580 Coffea canephora HOM05D004062 ORTHO05D004417 1.9e-13 79.7 137 35.0
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.9e-13 79.7 140 41.4
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 2.5e-13 79.3 136 33.1
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.2e-13 79.0 138 33.3
Actinidia14929 Actinidia chinensis HOM05D004062 ORTHO05D004417 4.2e-13 78.6 141 44.7
Cfa015828 Carpinus fangiana HOM05D004062 ORTHO05D004417 5.5e-13 78.2 102 47.1
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.2e-13 77.8 138 34.8
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.2e-13 77.8 138 34.8
CsaV3_5G028760 Cucumis sativus L. HOM05D004062 ORTHO05D004417 2.1e-12 76.3 125 40.0
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 2.1e-12 76.3 127 38.6
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 3.6e-12 75.5 136 36.0
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 3.6e-12 75.5 122 34.4
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 1.0e-11 73.9 128 37.5
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 1.0e-11 73.9 128 37.5
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.0e-11 73.9 123 34.1
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 1.0e-11 73.9 138 32.6
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 1.4e-11 73.6 127 37.0
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 3.0e-11 72.4 126 34.9
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 3.9e-11 72.0 136 38.2
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 3.9e-11 72.0 123 38.2
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 3.9e-11 72.0 123 38.2
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 5.1e-11 71.6 127 37.0
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 1.1e-10 70.5 138 32.6
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 1.1e-10 70.5 122 36.1
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.0e-10 69.7 124 33.1
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.0e-10 69.7 124 33.1
Cfa015829 Carpinus fangiana HOM05D004062 ORTHO05D004417 2.6e-10 69.3 90 48.9
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 9.7e-10 67.4 126 34.9
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.3e-09 67.0 122 34.4
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.7e-09 66.6 129 38.0
PGSC0003DMG400036326 Solanum tuberosum HOM05D004062 ORTHO05D004417 1.7e-09 66.6 126 40.5
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 3.7e-09 65.5 143 31.5
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 3.7e-09 65.5 128 38.3
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 3.7e-09 65.5 100 34.0
DCAR_023626 Daucus carota HOM05D004062 ORTHO05D004417 8.2e-09 64.3 128 35.2
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 8.2e-09 64.3 121 35.5
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 1.1e-08 63.9 121 33.1
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 1.4e-08 63.5 131 33.6
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 1.4e-08 63.5 126 36.5
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 1.4e-08 63.5 128 35.2
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.4e-08 62.8 131 32.8
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 2.4e-08 62.8 126 36.5
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 3.1e-08 62.4 117 35.0
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 3.1e-08 62.4 117 35.0
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 4.1e-08 62.0 135 34.1
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 7.0e-08 61.2 134 32.8
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 1.5e-07 60.1 133 31.6
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 1.5e-07 60.1 126 33.3
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 2.6e-07 59.3 132 31.8
COL.COLO4_32105 Corchorus olitorius HOM05D004062 ORTHO05D004417 2.6e-07 59.3 47 72.3
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 2.6e-07 59.3 121 33.9
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 3.4e-07 58.9 116 31.9
SEGI_27005 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 4.5e-07 58.5 118 33.9
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 5.9e-07 58.2 122 29.5
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 5.9e-07 58.2 136 31.6
Sed0027184 Sechium edule HOM05D004062 ORTHO05D004417 7.7e-07 57.8 98 41.8
Cpa.g.sc151.47 Carica papaya HOM05D003529 ORTHO05D004106 1.0e-06 57.4 124 34.7
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.3e-06 57.0 133 33.1
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 1.3e-06 57.0 90 35.6
SEGI_14476 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 1.3e-06 57.0 117 32.5
Oeu008332.1 Olea europaea HOM05D003529 ORTHO05D004106 2.2e-06 56.2 130 32.3
Sed0005967 Sechium edule HOM05D003529 ORTHO05D004106 2.2e-06 56.2 128 35.2
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 3.8e-06 55.5 121 33.1
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 5.0e-06 55.1 142 31.0
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 6.5e-06 54.7 134 31.3
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 6.5e-06 54.7 124 34.7
ECA236G3228 Erigeron canadensis HOM05D003529 ORTHO05D004106 6.5e-06 54.7 130 32.3
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 6.5e-06 54.7 126 32.5
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 6.5e-06 54.7 126 32.5


User provided reference genes

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